Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LRC_RS00045 Genome accession   NC_015975
Coordinates   9895..10440 (+) Length   181 a.a.
NCBI ID   WP_014072633.1    Uniprot ID   G2SPI9
Organism   Ligilactobacillus ruminis ATCC 27782     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4895..15440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRC_RS00035 (LRC_00070) gyrA 6784..9327 (+) 2544 WP_014072631.1 DNA gyrase subunit A -
  LRC_RS00040 (LRC_00080) rpsF 9564..9857 (+) 294 WP_014072632.1 30S ribosomal protein S6 -
  LRC_RS00045 (LRC_00090) ssb 9895..10440 (+) 546 WP_014072633.1 single-stranded DNA-binding protein Machinery gene
  LRC_RS00050 (LRC_00100) rpsR 10461..10697 (+) 237 WP_003695889.1 30S ribosomal protein S18 -
  LRC_RS00055 (LRC_00110) - 11737..12738 (-) 1002 WP_014072634.1 DUF1002 domain-containing protein -
  LRC_RS00060 (LRC_00120) pnuC 13002..13763 (+) 762 WP_014072635.1 nicotinamide riboside transporter PnuC -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19819.35 Da        Isoelectric Point: 4.9497

>NTDB_id=42284 LRC_RS00045 WP_014072633.1 9895..10440(+) (ssb) [Ligilactobacillus ruminis ATCC 27782]
MINRVVLVGRLTRDPDLRYTNSGTSVASFTVAVDRNFTNQQGNREADFINCVVWGKSAENFANFTHKGSLVGIEGRIQTR
SYENQQGNRVYVTEVVTENFSLLESKAESDRYRAQHGGSASSAPRQQSQSSFGGNPYGAPTNNQGSYQQDNAYGNGNNDA
MQDPFAGNGSKTDISEDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=42284 LRC_RS00045 WP_014072633.1 9895..10440(+) (ssb) [Ligilactobacillus ruminis ATCC 27782]
ATGATCAATAGAGTTGTTTTGGTTGGTCGTTTGACCAGAGACCCTGATTTGCGCTACACGAATTCAGGTACTTCAGTGGC
CAGTTTCACTGTTGCCGTCGATCGAAACTTCACTAACCAACAGGGTAATCGTGAAGCAGATTTTATCAATTGTGTAGTAT
GGGGCAAATCCGCAGAGAATTTTGCCAACTTCACGCATAAGGGTTCGCTTGTCGGAATTGAAGGGCGCATCCAAACGCGT
TCTTACGAAAATCAGCAAGGGAATCGCGTGTATGTGACTGAAGTCGTTACGGAAAACTTCTCGTTGCTCGAATCCAAGGC
AGAATCTGATCGTTACCGCGCACAGCACGGTGGTTCGGCATCATCTGCTCCTCGTCAACAGAGTCAGTCTTCGTTCGGTG
GAAATCCTTACGGAGCTCCTACCAACAATCAGGGCAGTTATCAGCAAGATAACGCCTATGGCAACGGGAATAACGATGCC
ATGCAGGATCCGTTTGCCGGCAACGGCTCCAAGACGGATATTTCAGAAGACGACTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2SPI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.669

100

0.597
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.144

100

0.541

Multiple sequence alignment