Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   G3T44_RS03020 Genome accession   NZ_CP048765
Coordinates   575501..576274 (+) Length   257 a.a.
NCBI ID   WP_052794066.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB023     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 570501..581274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T44_RS03005 (G3T44_03005) - 571350..573284 (-) 1935 WP_087695607.1 ribonuclease R family protein -
  G3T44_RS03010 (G3T44_03010) ilvC 573403..574425 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  G3T44_RS03015 (G3T44_03015) - 574429..575511 (+) 1083 WP_052817304.1 divergent polysaccharide deacetylase family protein -
  G3T44_RS03020 (G3T44_03020) dprA 575501..576274 (+) 774 WP_052794066.1 DNA-processing protein DprA Machinery gene
  G3T44_RS03025 (G3T44_03025) ruvX 576271..576654 (+) 384 WP_002898550.1 Holliday junction resolvase RuvX -
  G3T44_RS03030 (G3T44_03030) - 576683..577522 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  G3T44_RS03035 (G3T44_03035) msrA 577698..578195 (-) 498 WP_167861639.1 peptide-methionine (S)-S-oxide reductase MsrA -
  G3T44_RS03040 (G3T44_03040) ppa 578237..578755 (-) 519 WP_002871349.1 inorganic diphosphatase -
  G3T44_RS03045 (G3T44_03045) adk 578765..579343 (-) 579 WP_167861640.1 adenylate kinase -
  G3T44_RS03050 (G3T44_03050) aspS 579340..581091 (-) 1752 WP_052817309.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28802.69 Da        Isoelectric Point: 7.6510

>NTDB_id=422776 G3T44_RS03020 WP_052794066.1 575501..576274(+) (dprA) [Campylobacter jejuni strain ZJB023]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSIYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=422776 G3T44_RS03020 WP_052794066.1 575501..576274(+) (dprA) [Campylobacter jejuni strain ZJB023]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTATTTATACGAAAAATTGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTGGTTGCGCAAGCAGATATAAAAAGTGGTTCCATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGGGACTAATTTACT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATGAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.219

99.611

0.988
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment