Detailed information NTG0422749

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IFJ78_RS02420
• Genome accession: NZ_CP061779
• Coordinates: 519361..520365 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain ZBX-P12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 514361..525365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IFJ78_RS02390 (IFJ78_02390)	fghA	514453..515304 (+)	852	WP_003163269.1	S-formylglutathione hydrolase	-
IFJ78_RS02395 (IFJ78_02395)	ispF	515375..515848 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IFJ78_RS02400 (IFJ78_02400)	truD	515845..516912 (+)	1068	WP_003163270.1	tRNA pseudouridine(13) synthase TruD	-
IFJ78_RS02405 (IFJ78_02405)	surE	516900..517649 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
IFJ78_RS02410 (IFJ78_02410)	-	517682..518317 (+)	636	WP_078451413.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IFJ78_RS02415 (IFJ78_02415)	-	518363..519256 (+)	894	WP_031639387.1	peptidoglycan DD-metalloendopeptidase family protein	-
IFJ78_RS02420 (IFJ78_02420)	rpoS	519361..520365 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
IFJ78_RS02425 (IFJ78_02425)	fdxA	520792..521115 (-)	324	WP_003092272.1	ferredoxin FdxA	-
IFJ78_RS02430 (IFJ78_02430)	mutS	521182..523749 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
IFJ78_RS02435 (IFJ78_02435)	-	523875..524882 (-)	1008	WP_003163274.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=422749 IFJ78_RS02420 WP_003113871.1 519361..520365(+) (rpoS) [Pseudomonas aeruginosa strain ZBX-P12]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=422749 IFJ78_RS02420 WP_003113871.1 519361..520365(+) (rpoS) [Pseudomonas aeruginosa strain ZBX-P12]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653