Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   G3T47_RS03125 Genome accession   NZ_CP048761
Coordinates   578444..579094 (-) Length   216 a.a.
NCBI ID   WP_052794084.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS004     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 573444..584094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T47_RS03090 (G3T47_03095) - 573822..574826 (+) 1005 WP_167840806.1 hypothetical protein -
  G3T47_RS03095 (G3T47_03100) tlyA 574823..575584 (+) 762 WP_002872582.1 TlyA family RNA methyltransferase -
  G3T47_RS03100 (G3T47_03105) ribF 575550..576404 (+) 855 WP_044261254.1 bifunctional riboflavin kinase/FAD synthetase -
  G3T47_RS03105 (G3T47_03110) cmoA 576391..577101 (+) 711 WP_167842718.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  G3T47_RS03110 (G3T47_03115) - 577091..577312 (-) 222 WP_002859102.1 EexN family lipoprotein -
  G3T47_RS03115 (G3T47_03120) - 577309..577743 (-) 435 WP_052781974.1 EexN family lipoprotein -
  G3T47_RS03120 (G3T47_03125) - 577801..578433 (-) 633 WP_052781975.1 trimeric intracellular cation channel family protein -
  G3T47_RS03125 (G3T47_03130) CJE0566 578444..579094 (-) 651 WP_052794084.1 DNA/RNA non-specific endonuclease Regulator
  G3T47_RS03130 (G3T47_03135) nth 579091..579717 (-) 627 WP_002852225.1 endonuclease III -
  G3T47_RS03135 (G3T47_03140) peb4 579798..580619 (+) 822 WP_167840539.1 peptidylprolyl isomerase PEB4 -
  G3T47_RS03140 (G3T47_03145) fbaA 580619..581683 (+) 1065 WP_070306314.1 class II fructose-bisphosphate aldolase -
  G3T47_RS03145 (G3T47_03150) - 581778..583220 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25413.04 Da        Isoelectric Point: 9.5529

>NTDB_id=422694 G3T47_RS03125 WP_052794084.1 578444..579094(-) (CJE0566) [Campylobacter jejuni strain ZS004]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRATWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=422694 G3T47_RS03125 WP_052794084.1 578444..579094(-) (CJE0566) [Campylobacter jejuni strain ZS004]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTGGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCGCTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCTAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment