Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   G3T48_RS02855 Genome accession   NZ_CP048760
Coordinates   538421..539071 (-) Length   216 a.a.
NCBI ID   WP_167840538.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS005     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 533421..544071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T48_RS02820 (G3T48_02830) - 533799..534803 (+) 1005 WP_167840806.1 hypothetical protein -
  G3T48_RS02825 (G3T48_02835) tlyA 534800..535561 (+) 762 WP_167840537.1 TlyA family RNA methyltransferase -
  G3T48_RS02830 (G3T48_02840) ribF 535527..536381 (+) 855 WP_052781972.1 bifunctional riboflavin kinase/FAD synthetase -
  G3T48_RS02835 (G3T48_02845) cmoA 536368..537078 (+) 711 WP_079460098.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  G3T48_RS02840 (G3T48_02850) - 537068..537289 (-) 222 WP_002859102.1 EexN family lipoprotein -
  G3T48_RS02845 (G3T48_02855) - 537286..537720 (-) 435 WP_052781974.1 EexN family lipoprotein -
  G3T48_RS02850 (G3T48_02860) - 537778..538410 (-) 633 WP_052781975.1 trimeric intracellular cation channel family protein -
  G3T48_RS02855 (G3T48_02865) CJE0566 538421..539071 (-) 651 WP_167840538.1 DNA/RNA non-specific endonuclease Regulator
  G3T48_RS02860 (G3T48_02870) nth 539068..539694 (-) 627 WP_002852225.1 endonuclease III -
  G3T48_RS02865 (G3T48_02875) peb4 539775..540596 (+) 822 WP_167840539.1 peptidylprolyl isomerase PEB4 -
  G3T48_RS02870 (G3T48_02880) fbaA 540596..541660 (+) 1065 WP_167840540.1 class II fructose-bisphosphate aldolase -
  G3T48_RS02875 (G3T48_02885) - 541755..543197 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25429.12 Da        Isoelectric Point: 9.5471

>NTDB_id=422667 G3T48_RS02855 WP_167840538.1 538421..539071(-) (CJE0566) [Campylobacter jejuni strain ZS005]
MKIFIFLLVISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEALNLKDKQIKKRPRFED
DANIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTSKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=422667 G3T48_RS02855 WP_167840538.1 538421..539071(-) (CJE0566) [Campylobacter jejuni strain ZS005]
ATGAAAATTTTCATCTTTTTACTCGTTATATCTCTTAATATTTTCGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTACAAACTCAAAG
GTACAAAAGCTGTTGCTTATAAAGTAGAAGCTTTAAATTTAAAAGATAAGCAAATTAAAAAACGTCCACGCTTTGAAGAT
GATGCAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTATACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TTCAAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment