Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3G87_RS04700 Genome accession   NZ_CP048714
Coordinates   1015502..1015903 (+) Length   133 a.a.
NCBI ID   WP_002461219.1    Uniprot ID   A0A853V538
Organism   Staphylococcus lugdunensis strain CGMH-SL36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1010502..1020903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3G87_RS04675 - 1011786..1012187 (+) 402 WP_002461226.1 F0F1 ATP synthase subunit epsilon -
  G3G87_RS04680 - 1012325..1012558 (+) 234 WP_002478965.1 DUF1146 family protein -
  G3G87_RS04685 murA 1012722..1013987 (+) 1266 WP_002461223.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  G3G87_RS04690 fabZ 1014024..1014464 (+) 441 WP_002461222.1 3-hydroxyacyl-ACP dehydratase FabZ -
  G3G87_RS04695 - 1014861..1015313 (-) 453 WP_002478966.1 YwpF-like family protein -
  G3G87_RS04700 ssb 1015502..1015903 (+) 402 WP_002461219.1 single-stranded DNA-binding protein Machinery gene
  G3G87_RS04705 - 1016382..1017089 (+) 708 WP_002478967.1 transglycosylase family protein -
  G3G87_RS04710 tenA 1017502..1018179 (+) 678 WP_002461217.1 thiaminase II -
  G3G87_RS04715 thiD 1018184..1019005 (+) 822 WP_002478968.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  G3G87_RS04720 thiM 1018998..1019786 (+) 789 WP_002478969.1 hydroxyethylthiazole kinase -
  G3G87_RS04725 thiE 1019789..1020427 (+) 639 WP_002478970.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15388.56 Da        Isoelectric Point: 6.7151

>NTDB_id=422529 G3G87_RS04700 WP_002461219.1 1015502..1015903(+) (ssb) [Staphylococcus lugdunensis strain CGMH-SL36]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE

Nucleotide


Download         Length: 402 bp        

>NTDB_id=422529 G3G87_RS04700 WP_002461219.1 1015502..1015903(+) (ssb) [Staphylococcus lugdunensis strain CGMH-SL36]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACCAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V538

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

69.697

99.248

0.692
  ssb Staphylococcus aureus MW2

68.939

99.248

0.684

Multiple sequence alignment