Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PARA_RS10520 Genome accession   NC_015964
Coordinates   979048..979254 (+) Length   68 a.a.
NCBI ID   WP_419760871.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae T3T1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 974048..984254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PARA_RS04920 (PARA_09750) leuB 974823..975899 (-) 1077 WP_014064804.1 3-isopropylmalate dehydrogenase -
  PARA_RS04925 (PARA_09760) leuA 976066..977613 (-) 1548 WP_014064805.1 2-isopropylmalate synthase -
  PARA_RS04930 (PARA_09770) dprA 978139..978996 (+) 858 Protein_968 DNA-processing protein DprA -
  PARA_RS10520 dprA 979048..979254 (+) 207 WP_419760871.1 hypothetical protein Machinery gene
  PARA_RS04935 (PARA_09780) yaaA 979318..980094 (+) 777 WP_014064807.1 peroxide stress protein YaaA -
  PARA_RS04940 (PARA_09790) - 980087..980677 (+) 591 WP_014064808.1 hypothetical protein -
  PARA_RS04945 (PARA_09800) pfkA 980790..981755 (+) 966 WP_014064809.1 6-phosphofructokinase -
  PARA_RS04950 (PARA_09810) folA 981835..982335 (-) 501 WP_014064810.1 type 3 dihydrofolate reductase -
  PARA_RS04955 (PARA_09820) proB 982477..983586 (+) 1110 WP_014064811.1 glutamate 5-kinase -
  PARA_RS04960 (PARA_09830) - 983699..984079 (+) 381 WP_014064812.1 hypothetical protein -

Sequence

Protein


Download         Length: 68 a.a.        Molecular weight: 7576.81 Da        Isoelectric Point: 4.1313

>NTDB_id=42251 PARA_RS10520 WP_419760871.1 979048..979254(+) (dprA) [Haemophilus parainfluenzae T3T1]
MTKPLTAKAPAVEPSHPELYQYITYTPISLDDLSAALNLPVDLLLVQLLDLELQDLIVNENGLYKRIA

Nucleotide


Download         Length: 207 bp        

>NTDB_id=42251 PARA_RS10520 WP_419760871.1 979048..979254(+) (dprA) [Haemophilus parainfluenzae T3T1]
ATGACTAAACCACTCACCGCAAAAGCACCTGCGGTAGAGCCGAGTCATCCTGAACTTTATCAATATATTACTTATACACC
GATAAGTCTTGATGATTTATCTGCAGCATTGAATTTGCCGGTGGATTTGCTTTTAGTGCAGTTATTAGATTTGGAGTTAC
AAGATTTAATCGTCAATGAGAATGGACTCTATAAGCGGATAGCATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(4-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

72.222

79.412

0.574

Multiple sequence alignment