Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3G86_RS04635 Genome accession   NZ_CP048713
Coordinates   1004815..1005216 (+) Length   133 a.a.
NCBI ID   WP_002461219.1    Uniprot ID   A0A853V538
Organism   Staphylococcus lugdunensis strain CGMH-SL138     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 999815..1010216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3G86_RS04615 - 1000269..1002023 (+) 1755 WP_037540683.1 ABC transporter ATP-binding protein -
  G3G86_RS04620 - 1002007..1003727 (+) 1721 Protein_913 ABC transporter ATP-binding protein -
  G3G86_RS04625 - 1003729..1003833 (+) 105 Protein_914 IS200/IS605 family transposase -
  G3G86_RS04630 - 1004173..1004625 (-) 453 WP_002461221.1 YwpF-like family protein -
  G3G86_RS04635 ssb 1004815..1005216 (+) 402 WP_002461219.1 single-stranded DNA-binding protein Machinery gene
  G3G86_RS04640 - 1005695..1006402 (+) 708 WP_249689276.1 transglycosylase family protein -
  G3G86_RS04645 tenA 1006815..1007492 (+) 678 WP_002461217.1 thiaminase II -
  G3G86_RS04650 thiD 1007497..1008318 (+) 822 WP_002478968.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  G3G86_RS04655 thiM 1008311..1009099 (+) 789 WP_002492088.1 hydroxyethylthiazole kinase -
  G3G86_RS04660 thiE 1009102..1009740 (+) 639 WP_002492090.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15388.56 Da        Isoelectric Point: 6.7151

>NTDB_id=422495 G3G86_RS04635 WP_002461219.1 1004815..1005216(+) (ssb) [Staphylococcus lugdunensis strain CGMH-SL138]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE

Nucleotide


Download         Length: 402 bp        

>NTDB_id=422495 G3G86_RS04635 WP_002461219.1 1004815..1005216(+) (ssb) [Staphylococcus lugdunensis strain CGMH-SL138]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACTAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V538

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

69.697

99.248

0.692
  ssb Staphylococcus aureus MW2

68.939

99.248

0.684

Multiple sequence alignment