Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ID627_RS06220 Genome accession   NZ_CP061764
Coordinates   1261775..1262512 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O19:H7 strain 730V1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1256775..1267512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID627_RS06190 (ID627_06190) yfiL 1256933..1257298 (-) 366 WP_024194728.1 DUF2799 domain-containing protein -
  ID627_RS06195 (ID627_06195) aroF 1257508..1258578 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ID627_RS06200 (ID627_06200) tyrA 1258589..1259710 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ID627_RS06205 (ID627_06205) pheA 1259753..1260913 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  ID627_RS06210 (ID627_06210) pheL 1261012..1261059 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  ID627_RS06215 (ID627_06215) raiA 1261163..1261504 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ID627_RS06220 (ID627_06220) comL 1261775..1262512 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ID627_RS06225 (ID627_06225) rluD 1262647..1263627 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ID627_RS06230 (ID627_06230) yfiH 1263624..1264355 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  ID627_RS06235 (ID627_06235) clpC 1264485..1267058 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=422480 ID627_RS06220 WP_000197686.1 1261775..1262512(-) (comL) [Escherichia coli O19:H7 strain 730V1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=422480 ID627_RS06220 WP_000197686.1 1261775..1262512(-) (comL) [Escherichia coli O19:H7 strain 730V1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment