Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   G3U99_RS25055 Genome accession   NZ_CP048694
Coordinates   1899220..1901277 (-) Length   685 a.a.
NCBI ID   WP_242704165.1    Uniprot ID   -
Organism   Vibrio coralliilyticus OCN008     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1894220..1906277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3U99_RS25040 (G3U99_24930) clcA 1895295..1896695 (+) 1401 WP_031342542.1 H(+)/Cl(-) exchange transporter ClcA -
  G3U99_RS25045 (G3U99_24935) - 1896814..1897788 (+) 975 WP_021455901.1 TDT family transporter -
  G3U99_RS25050 (G3U99_24940) cqsA 1898004..1899185 (+) 1182 WP_021455900.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  G3U99_RS25055 (G3U99_24945) cqsS 1899220..1901277 (-) 2058 WP_242704165.1 hybrid sensor histidine kinase/response regulator Regulator
  G3U99_RS25060 (G3U99_24950) - 1901397..1904438 (-) 3042 WP_165579929.1 AAA family ATPase -
  G3U99_RS25065 (G3U99_24955) - 1904448..1905578 (-) 1131 WP_165579930.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 685 a.a.        Molecular weight: 78730.14 Da        Isoelectric Point: 5.3043

>NTDB_id=422418 G3U99_RS25055 WP_242704165.1 1899220..1901277(-) (cqsS) [Vibrio coralliilyticus OCN008]
MTAVLESVRKVYQYAEPNLTLVGWMGLLGFPTYYYVWSYLFPQPYESLTLRLFCSFLFAIIAFRHALPKHIQRYMPQYYL
ISIAICLPYFFSYMMFMNEWSTIWAMSFMASVFLHVLLVHQTRIMLLQAAISLLFAFITVYGFNFSLAMEKIVWPYLPIF
LFTYVFGNLFYFRNQVEHESKVSIAKSFGAGIAHEMRNPLSALKASFDVLSSLLPDEKSKTAEFYSMSHQELTIAREVLS
DADEVIQNGNETIDLLLTSIDENRVSTSTFRKHSLKRVTEDSLSSFAYKSSKDKQAVQFKCEQDAEVFGSDTLIKYALYN
LLKNAFYYQNGNHFQITVEIKCSDKNSTILFRDNGVGIAPEVLENIFKDFYTFGKSGSYGLGLPFCRKVMQALGGRISCR
SELNEWTEFTLTFPHYHSARVDYIKLDLMKSKSALYVGETSVIARLLNEQSFYKGFTLNTVDLDLANSREEYEFEYDLIF
IDLDAVITSPDQLAALENKLHFTEARIVFLYDENNRYHNDIERHLTIYPVEKHRMSLEPGRVLDELFFESPEPDRNLLPR
KEVRVGKTIVIADDNHSLRTYTSILLEQQGFEVIQAQNGQEVLDKLQNNLVDLVLMDIEMPQLNGLDAANAIRSSDSEYA
NIPILGHTGDSTSVAIDKIHQSGMNDYIIKPAGTEVLLDKISNWI

Nucleotide


Download         Length: 2058 bp        

>NTDB_id=422418 G3U99_RS25055 WP_242704165.1 1899220..1901277(-) (cqsS) [Vibrio coralliilyticus OCN008]
ATGACAGCAGTTCTGGAATCAGTTCGCAAAGTATACCAGTATGCAGAACCAAACCTCACGCTCGTAGGTTGGATGGGGTT
GCTTGGCTTTCCAACTTACTACTACGTCTGGTCCTACTTATTCCCTCAGCCATACGAAAGCCTGACGCTCAGGCTCTTCT
GTTCATTCCTATTCGCAATAATTGCTTTTCGGCATGCGCTCCCCAAACACATACAGCGTTATATGCCGCAATATTATCTC
ATCTCGATAGCGATCTGCTTGCCGTACTTCTTTAGCTATATGATGTTTATGAACGAATGGTCGACGATATGGGCGATGTC
GTTTATGGCTTCAGTTTTTCTCCATGTTCTGCTTGTTCATCAAACACGAATTATGCTTCTGCAAGCCGCGATTTCGTTGT
TGTTTGCTTTTATTACCGTCTACGGATTTAACTTTAGTTTGGCCATGGAGAAGATTGTGTGGCCATATTTGCCGATTTTT
CTCTTCACATATGTGTTTGGGAACCTGTTTTACTTCCGTAATCAGGTTGAACATGAGAGTAAAGTATCTATAGCTAAGTC
CTTTGGCGCAGGAATCGCTCATGAAATGCGTAACCCGTTAAGTGCACTGAAAGCATCGTTTGACGTGCTAAGTTCCTTGT
TACCTGATGAAAAGTCCAAAACTGCTGAATTTTACTCAATGTCTCATCAGGAATTAACCATTGCGAGAGAAGTACTCAGT
GATGCGGATGAAGTGATTCAGAATGGTAATGAGACCATTGATCTTCTGTTAACTTCTATTGATGAAAACCGTGTATCAAC
GTCAACATTCAGAAAGCATTCTTTGAAACGTGTGACGGAAGATTCTCTATCCAGCTTTGCTTACAAAAGCTCAAAGGACA
AACAGGCTGTTCAGTTCAAATGTGAACAGGATGCTGAAGTTTTTGGTAGTGATACGCTCATCAAATATGCTCTGTATAAC
CTTCTCAAAAATGCCTTTTATTATCAGAATGGCAATCACTTCCAAATCACTGTTGAAATAAAGTGCTCCGATAAAAACAG
TACCATCTTATTTCGCGATAACGGCGTTGGTATCGCCCCTGAAGTGCTTGAAAACATTTTTAAAGATTTCTATACCTTCG
GTAAGTCAGGCAGTTATGGCCTAGGTTTACCATTTTGTCGAAAAGTGATGCAAGCTTTAGGTGGCAGAATAAGCTGCCGG
TCTGAGTTGAATGAATGGACTGAATTCACGCTGACGTTCCCTCATTATCACTCAGCGAGAGTAGATTATATAAAACTGGA
TCTAATGAAATCTAAATCAGCCCTCTATGTTGGGGAAACAAGTGTTATTGCACGGCTCCTCAATGAGCAGTCTTTCTACA
AAGGCTTTACACTTAACACGGTTGACCTCGATCTGGCAAACAGTAGGGAAGAATACGAATTTGAATACGACTTGATATTC
ATCGATTTAGATGCAGTGATAACCTCACCTGATCAACTAGCAGCATTAGAGAATAAGCTTCACTTTACCGAAGCGAGAAT
CGTGTTTCTCTACGATGAGAACAACCGCTATCACAACGATATAGAAAGGCACCTCACCATTTACCCTGTTGAGAAGCATC
GAATGTCGCTAGAGCCAGGGCGTGTTTTGGACGAATTGTTCTTTGAGTCTCCTGAGCCTGACCGAAACTTACTCCCAAGA
AAAGAAGTCCGTGTGGGCAAAACGATTGTCATTGCAGACGATAATCATTCACTCCGTACTTACACATCGATACTTTTAGA
ACAGCAGGGGTTTGAGGTGATTCAAGCTCAGAACGGGCAAGAAGTGTTAGATAAACTTCAAAACAACCTTGTCGATTTAG
TGCTAATGGATATTGAGATGCCACAACTGAATGGCCTTGATGCAGCTAATGCTATTCGTTCATCAGATAGTGAGTACGCC
AATATTCCGATTTTAGGCCACACTGGAGACTCTACATCTGTTGCTATCGATAAGATTCATCAGTCAGGGATGAATGATTA
TATTATTAAGCCTGCCGGTACAGAAGTACTGCTGGATAAAATATCGAACTGGATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(314-415)

Response regulator receiver domain (Response_reg)

(569-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

52.256

100

0.524

Multiple sequence alignment