Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   G3U99_RS25050 Genome accession   NZ_CP048694
Coordinates   1898004..1899185 (+) Length   393 a.a.
NCBI ID   WP_021455900.1    Uniprot ID   -
Organism   Vibrio coralliilyticus OCN008     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1893004..1904185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3U99_RS25035 (G3U99_24925) - 1893910..1894887 (+) 978 WP_021455903.1 CobW family GTP-binding protein -
  G3U99_RS25040 (G3U99_24930) clcA 1895295..1896695 (+) 1401 WP_031342542.1 H(+)/Cl(-) exchange transporter ClcA -
  G3U99_RS25045 (G3U99_24935) - 1896814..1897788 (+) 975 WP_021455901.1 TDT family transporter -
  G3U99_RS25050 (G3U99_24940) cqsA 1898004..1899185 (+) 1182 WP_021455900.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  G3U99_RS25055 (G3U99_24945) cqsS 1899220..1901277 (-) 2058 WP_242704165.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43935.08 Da        Isoelectric Point: 6.4970

>NTDB_id=422417 G3U99_RS25050 WP_021455900.1 1898004..1899185(+) (cqsA) [Vibrio coralliilyticus OCN008]
MNTLNHYPPLPDFINNKINFYLDDLINTNKNGKHLVLGKRPQSGDLVLQSNDYLDLSNNPDIIDHHISSIMARKNSPFMS
GIFLQDESSKPEVEEKLAKYVGFQSCLLSQSGWAANTALLQTICDSETNVYIDFFAHMSLWEGARIAGANIHPFMHNNVK
HLNKLINRHGPGIVLVDSVYSTIGTIAPLVELVLLAKEYGCAILVDESHSLGTHGKHGAGLLQSLKLSHQVDFMTASLAK
TFAYRAGAIWCNNRANDCVPFVAYPAIFSSTMLPHELDRLDKTLDIIKEQDKERAYLQELSDYLKTNLANIGLTIRSQSQ
IIAVETGDERNTEKVRDFLESQGIFGAVFCRPATTPNKNIIRFSLNSSTTKEEVNKIIRACQAAYELPDMYFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=422417 G3U99_RS25050 WP_021455900.1 1898004..1899185(+) (cqsA) [Vibrio coralliilyticus OCN008]
ATGAATACGCTTAACCATTACCCTCCTTTGCCAGATTTTATTAATAATAAAATAAATTTCTATCTGGATGACTTAATTAA
TACCAATAAGAACGGTAAGCATTTAGTTCTTGGAAAAAGGCCGCAAAGTGGCGACCTCGTTTTGCAAAGTAATGATTACC
TCGATTTATCCAATAACCCCGATATCATTGATCACCATATTAGTTCTATTATGGCACGTAAAAATAGCCCATTTATGTCA
GGTATATTTTTGCAGGATGAAAGCTCCAAGCCTGAAGTAGAAGAAAAACTCGCCAAGTATGTCGGGTTTCAATCTTGTTT
ACTTTCTCAATCTGGTTGGGCGGCCAATACTGCCTTGCTACAAACCATTTGTGACAGTGAAACAAATGTCTACATCGACT
TTTTTGCTCATATGTCTTTATGGGAAGGTGCGCGTATCGCCGGTGCTAACATCCATCCCTTTATGCATAATAACGTCAAG
CATTTGAATAAGTTGATAAACCGACATGGCCCTGGAATCGTTCTTGTCGATTCGGTTTACAGTACAATAGGCACCATTGC
CCCCTTAGTCGAGCTCGTGTTACTCGCGAAGGAATATGGCTGTGCGATATTAGTCGATGAATCACACTCCCTAGGTACTC
ACGGTAAACATGGTGCTGGTTTGTTACAAAGCTTAAAACTAAGTCATCAAGTCGACTTTATGACCGCCAGTTTAGCAAAA
ACGTTTGCCTATCGAGCTGGTGCTATTTGGTGCAACAATCGCGCTAATGATTGTGTACCATTTGTGGCTTACCCCGCGAT
ATTTAGCTCTACAATGTTACCACATGAGTTGGATAGGCTTGATAAGACACTGGATATAATAAAAGAACAAGATAAAGAAA
GAGCTTACTTACAGGAGTTAAGCGATTATTTAAAAACTAACCTAGCAAATATCGGGCTAACTATTCGAAGTCAGTCGCAA
ATAATAGCGGTTGAAACGGGAGATGAACGTAACACCGAAAAAGTGAGAGACTTTTTGGAATCACAAGGAATATTTGGTGC
GGTATTTTGTCGACCCGCAACGACACCTAATAAAAACATAATACGTTTTTCACTTAATAGCTCTACCACTAAAGAAGAAG
TAAATAAAATCATTCGCGCTTGTCAGGCGGCTTACGAACTTCCAGATATGTATTTTATTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

63.377

97.964

0.621

Multiple sequence alignment