Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   G3U99_RS08850 Genome accession   NZ_CP048693
Coordinates   1828555..1829949 (+) Length   464 a.a.
NCBI ID   WP_019275536.1    Uniprot ID   -
Organism   Vibrio coralliilyticus OCN008     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1823555..1834949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3U99_RS08830 (G3U99_08805) - 1824123..1824563 (+) 441 WP_129542192.1 bactofilin family protein -
  G3U99_RS08835 (G3U99_08810) - 1824641..1825234 (-) 594 WP_021458194.1 outer membrane beta-barrel protein -
  G3U99_RS08845 (G3U99_08820) uvrB 1826261..1828291 (+) 2031 WP_021458193.1 excinuclease ABC subunit UvrB -
  G3U99_RS08850 (G3U99_08825) luxO 1828555..1829949 (+) 1395 WP_019275536.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  G3U99_RS08855 (G3U99_08830) luxU 1829953..1830297 (+) 345 WP_029236080.1 quorum-sensing phosphorelay protein LuxU -
  G3U99_RS08860 (G3U99_08835) - 1830283..1831170 (-) 888 WP_019275535.1 YvcK family protein -
  G3U99_RS08865 (G3U99_08840) moaA 1831476..1832465 (+) 990 WP_021458192.1 GTP 3',8-cyclase MoaA -
  G3U99_RS08870 (G3U99_08845) moaB 1832555..1833067 (+) 513 WP_006963014.1 molybdenum cofactor biosynthesis protein B -
  G3U99_RS08875 (G3U99_08850) moaC 1833080..1833559 (+) 480 WP_021458191.1 cyclic pyranopterin monophosphate synthase MoaC -
  G3U99_RS08880 (G3U99_08855) moaD 1833556..1833801 (+) 246 WP_021458190.1 molybdopterin synthase sulfur carrier subunit -
  G3U99_RS08885 (G3U99_08860) moaE 1833801..1834256 (+) 456 WP_006963011.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51738.07 Da        Isoelectric Point: 5.8826

>NTDB_id=422403 G3U99_RS08850 WP_019275536.1 1828555..1829949(+) (luxO) [Vibrio coralliilyticus OCN008]
MQHNTQTQKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDVLHAVKQKM
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSHTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKDFVRLAPEVVSRFAQYEWPGNVRQLQNVLRNVVVLNNGENISMDMLPPPLNQPVENQI
RVDLQDKDSFSVHDIFPLWLTEKKAIEQAIQACEGNIPKAAGYLDVSPSTLYRKLQNWNTKETQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=422403 G3U99_RS08850 WP_019275536.1 1828555..1829949(+) (luxO) [Vibrio coralliilyticus OCN008]
ATGCAACATAATACGCAAACACAAAAGTCCAAATATCTTTTGATGGTTGAAGACACTGCGTCGGTCGCGGCGTTGTACCG
TTCTTATCTCACCCCTCTGGGTATCGATATCAACATTGTTGGTACCGGGCGCGATGCCATTGAAAGCCTCAACTTTCGCA
CTCCTGATTTAATCCTATTGGACCTTCGTCTTCCCGACATGACAGGTATGGATGTTTTGCATGCAGTGAAACAGAAAATG
CCTGATGTTCCAGTGATCTTCATGACGGCCCATGGCTCGATTGATACCGCTGTAGAAGCGATGCGTCATGGTGCTCAGGA
TTTCCTTATCAAGCCGTGTGAAGCGGACCGACTCCGTGTCACGGTTAACAACGCTATTCGCAAAGCGACCAAGTTGAAAA
ATGAAGCTGATAATCCGGGTAACCAGAATTATCAAGGCTTTATCGGTAGTAGCCACACTATGCAGGCTGTGTATCGTACC
ATCGACTCCGCCGCATCCAGTAAAGCCAGTATTTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTGTGTGCAGAGGC
CATTCATGCGGCAAGTAAGCGTGGTGACAAGCCCTTCATCGCGATCAACTGTGCGGCTATTCCAAAAGATCTGATTGAAA
GTGAATTGTTTGGTCATGTGAAAGGCGCGTTTACTGGCGCTGCCACTGATCGACAAGGCGCGGCTGAGTTGGCTGATGGA
GGCACGCTGTTCCTTGACGAACTGTGTGAGATGGATCTGGATCTGCAAACTAAGCTACTACGTTTTATTCAGACGGGTAC
CTTCCAGAAAGTCGGCTCTTCGAAAATGAAAAGCGTCGACGTGCGTTTCGTCTGTGCAACCAACCGAGACCCTTGGAAAG
AGGTGCAGGAAGGTCGCTTCCGTGAAGACTTATATTATCGTTTATACGTAATTCCTTTGCACCTACCTCCTTTGAGGGAG
CGTGGCGATGATGTCATAGAAATTGCTTATTCTCTGCTAGGCTTTATGTCTAAAGAGGAAGGAAAAGACTTTGTCCGACT
GGCACCAGAAGTTGTAAGCCGCTTCGCTCAATACGAGTGGCCGGGTAATGTTCGTCAATTGCAAAACGTACTGAGAAACG
TCGTGGTTCTTAACAACGGTGAAAACATCTCCATGGATATGTTGCCGCCTCCATTGAATCAGCCGGTCGAAAATCAGATC
AGGGTAGACTTGCAGGACAAAGACAGTTTTTCTGTGCATGACATTTTCCCTCTGTGGTTAACAGAGAAGAAAGCTATTGA
GCAAGCGATTCAGGCCTGTGAAGGGAATATTCCTAAAGCCGCGGGCTATTTAGACGTCAGTCCATCAACGCTTTATCGCA
AGCTGCAAAACTGGAACACGAAGGAAACACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-457)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.946

96.552

0.849
  pilR Pseudomonas aeruginosa PAK

38.085

96.767

0.369

Multiple sequence alignment