Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   G3T13_RS08750 Genome accession   NZ_CP048686
Coordinates   1794529..1795767 (+) Length   412 a.a.
NCBI ID   WP_163604845.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain KACC 13441     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1789529..1800767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T13_RS08725 - 1790093..1790839 (-) 747 WP_061774546.1 DUF975 family protein -
  G3T13_RS08730 yajC 1791038..1791394 (+) 357 WP_061774545.1 preprotein translocase subunit YajC -
  G3T13_RS08735 - 1791607..1792353 (+) 747 WP_061774544.1 isoprenyl transferase -
  G3T13_RS08740 - 1792350..1793144 (+) 795 WP_061774543.1 phosphatidate cytidylyltransferase -
  G3T13_RS08745 - 1793249..1794424 (+) 1176 WP_061774542.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  G3T13_RS08750 eeP 1794529..1795767 (+) 1239 WP_163604845.1 RIP metalloprotease RseP Regulator
  G3T13_RS08755 - 1795817..1796566 (-) 750 WP_061774540.1 helix-turn-helix transcriptional regulator -
  G3T13_RS08760 - 1796800..1797222 (+) 423 WP_061774539.1 hypothetical protein -
  G3T13_RS08765 - 1797233..1797976 (+) 744 WP_061774538.1 hypothetical protein -
  G3T13_RS08770 - 1798023..1799855 (+) 1833 WP_061774537.1 C47 family peptidase -

Sequence


Protein


Download         Length: 412 a.a.        Molecular weight: 45180.78 Da        Isoelectric Point: 6.5061

>NTDB_id=422295 G3T13_RS08750 WP_163604845.1 1794529..1795767(+) (eeP) [Lactococcus raffinolactis strain KACC 13441]
MQSLVTFIIIFGIIVCVHEYGHLFFAKKSGILVREFSIGMGPKIYAHQAKDGTLYTIRMLPLGGYVRMAGWGEDETEIKT
GAPVSLTLDVQNQTVTRINLSDKVQFGQALPMLVTAYDFEKALIITGEVNGEVVTYAVAHDATVVEEDGTELRIAPLDVQ
YQSASLPGRMMTNFAGPLNNFILGVVAFVLVAFMQGGVQDLNTNQITVSDHNLPAYQAGLRTGDKVETINDVPVSDWSSL
SKQIGESDGKAIQVKTDLKTLTITPKKQEKSYIIGITPFLKTGFVDKLTGGLKEAWTSAFAIINALKDLILHPDINKLGG
PVAMYRMSGDVAREGITTVIRFMALLSINLGIFNLIPIPALDGGKIVMNIIEAIRRKPMKQEYESIITLVGVGIMVVLMI
AVTWNDIWRLFR

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=422295 G3T13_RS08750 WP_163604845.1 1794529..1795767(+) (eeP) [Lactococcus raffinolactis strain KACC 13441]
GTGCAAAGTTTAGTCACATTTATCATCATTTTCGGTATTATTGTTTGTGTCCATGAGTATGGTCACCTGTTTTTTGCTAA
AAAATCAGGGATTTTGGTGCGAGAATTTTCGATTGGTATGGGACCGAAAATCTATGCACATCAAGCTAAAGATGGCACCC
TTTATACCATTAGAATGTTACCTCTGGGTGGTTATGTTCGCATGGCTGGCTGGGGTGAAGATGAAACTGAGATTAAAACT
GGTGCACCTGTGAGCTTGACATTAGATGTCCAAAATCAGACGGTGACACGCATCAATCTCAGTGATAAAGTGCAGTTTGG
TCAAGCGCTTCCGATGCTTGTCACAGCTTACGACTTCGAAAAGGCTTTAATCATTACCGGGGAGGTCAATGGGGAAGTCG
TGACGTATGCGGTGGCTCATGATGCGACGGTTGTTGAGGAAGATGGTACAGAGCTGCGCATTGCGCCTTTAGATGTGCAA
TATCAGAGTGCGAGTCTGCCTGGTCGAATGATGACGAACTTTGCAGGACCGCTCAATAACTTTATTTTGGGCGTGGTGGC
TTTTGTTCTGGTTGCCTTTATGCAAGGTGGCGTGCAAGATTTGAATACCAATCAAATCACGGTGTCTGATCACAATTTAC
CGGCTTATCAGGCTGGTTTACGGACGGGTGATAAAGTTGAGACGATTAATGATGTGCCAGTTTCTGATTGGTCTAGCTTA
TCAAAACAAATCGGTGAATCAGATGGTAAGGCCATTCAAGTTAAGACGGACCTCAAAACACTGACGATTACGCCTAAGAA
ACAAGAGAAAAGTTATATTATCGGGATTACGCCGTTTTTAAAAACAGGATTTGTAGATAAGTTAACAGGTGGTCTTAAAG
AGGCGTGGACGTCTGCTTTTGCGATTATTAATGCTTTGAAAGATTTAATTTTACATCCAGATATTAATAAATTAGGTGGA
CCAGTTGCCATGTATCGGATGTCTGGTGATGTGGCGCGTGAGGGTATCACGACGGTTATCAGATTTATGGCACTTTTATC
CATTAACTTAGGAATTTTCAATCTGATTCCGATTCCTGCCCTGGATGGTGGTAAGATTGTCATGAATATCATTGAAGCGA
TTCGTCGTAAACCGATGAAACAAGAATATGAAAGTATCATTACTCTTGTAGGTGTGGGCATCATGGTTGTCTTGATGATT
GCGGTGACTTGGAATGATATTTGGCGGTTGTTTCGGTAA

Domains


Predicted by InterproScan.

(6-398)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

60.57

100

0.619

  eeP Streptococcus thermophilus LMD-9

60.333

100

0.617


Multiple sequence alignment