Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   G3T13_RS00870 Genome accession   NZ_CP048686
Coordinates   177163..177879 (-) Length   238 a.a.
NCBI ID   WP_061774954.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain KACC 13441     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 172163..182879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T13_RS00855 - 172940..173899 (+) 960 WP_061774957.1 YbbR-like domain-containing protein -
  G3T13_RS00860 glmM 173973..175328 (+) 1356 WP_061774956.1 phosphoglucosamine mutase -
  G3T13_RS00865 nox 175458..176786 (-) 1329 WP_061774955.1 H2O-forming NADH oxidase -
  G3T13_RS00870 treR 177163..177879 (-) 717 WP_061774954.1 trehalose operon repressor Regulator
  G3T13_RS00875 - 177989..178861 (+) 873 WP_061774953.1 Cof-type HAD-IIB family hydrolase -
  G3T13_RS00880 - 179005..179994 (+) 990 WP_061774952.1 LacI family DNA-binding transcriptional regulator -
  G3T13_RS00885 - 180545..182041 (+) 1497 WP_061774951.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27820.04 Da        Isoelectric Point: 8.6311

>NTDB_id=422266 G3T13_RS00870 WP_061774954.1 177163..177879(-) (treR) [Lactococcus raffinolactis strain KACC 13441]
MKKYEIILHDLEYKIKNKTYQENDLLPSENELVKIYYASRATIRQALKILEEKGLIQKQKGRGSVVIASSKLNFPISGLT
SYKELQNSLGFESVTEVIKFDKITVDSELAAKTLFEIGIPVWRIIRVRKIDGEAVVLDHDFVKYDICPNMTKTDVAYSLY
DYLEKKLKIEISFAQKEITIDFVNDEDRQLLDLNLLDRHIVSVKSHVFLNDASVFQYTDSRHQVDKFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=422266 G3T13_RS00870 WP_061774954.1 177163..177879(-) (treR) [Lactococcus raffinolactis strain KACC 13441]
ATGAAAAAATATGAAATAATTTTACACGATTTGGAATACAAAATAAAAAATAAGACTTATCAGGAAAACGATCTCCTACC
TAGTGAAAATGAATTGGTCAAAATCTACTACGCCAGTAGAGCAACGATTCGCCAAGCGCTGAAAATTTTGGAAGAAAAGG
GGTTAATTCAGAAACAAAAAGGGCGAGGCTCTGTGGTTATTGCTTCTAGCAAACTTAATTTTCCGATTTCTGGCTTAACC
AGCTACAAGGAACTACAAAATTCACTCGGATTTGAAAGTGTCACTGAAGTCATCAAATTTGACAAAATCACAGTTGACAG
TGAACTTGCTGCAAAAACACTTTTTGAAATCGGAATCCCTGTGTGGCGTATCATACGCGTTCGTAAGATTGACGGTGAAG
CCGTCGTGCTTGATCATGACTTCGTCAAATATGATATTTGTCCCAATATGACCAAAACAGATGTCGCTTATTCACTCTAC
GACTACCTTGAAAAAAAGCTGAAAATTGAGATTTCCTTCGCTCAGAAAGAAATTACCATTGATTTCGTTAATGACGAAGA
TCGGCAACTCTTGGACCTGAATCTCTTGGACCGCCATATCGTCAGTGTCAAAAGCCATGTTTTTCTCAATGATGCAAGCG
TCTTTCAATACACGGATAGTCGACATCAAGTTGATAAATTCCGGTTCACTGAATTTGCCAGACGGCAAAAACGTTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

48.523

99.58

0.483

Multiple sequence alignment