Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   G0030_RS08000 Genome accession   NZ_CP048681
Coordinates   1703234..1703578 (-) Length   114 a.a.
NCBI ID   WP_242898261.1    Uniprot ID   -
Organism   Acinetobacter indicus strain Q186-3_T     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698234..1708578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0030_RS07970 (G0030_07955) tadA 1698464..1698985 (-) 522 WP_104488986.1 tRNA adenosine(34) deaminase TadA -
  G0030_RS07975 (G0030_07960) - 1698989..1700113 (-) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  G0030_RS07980 (G0030_07965) ung 1700110..1700823 (-) 714 WP_005177514.1 uracil-DNA glycosylase -
  G0030_RS07985 (G0030_07970) - 1700865..1701461 (-) 597 WP_005177512.1 6-carboxytetrahydropterin synthase -
  G0030_RS07990 (G0030_07975) gspK 1701609..1702556 (-) 948 WP_180181972.1 type II secretion system minor pseudopilin GspK -
  G0030_RS07995 (G0030_07980) xcpW 1702602..1703237 (-) 636 WP_152342358.1 type II secretion system minor pseudopilin GspJ Machinery gene
  G0030_RS08000 (G0030_07985) xcpV 1703234..1703578 (-) 345 WP_242898261.1 type II secretion system protein Machinery gene
  G0030_RS08005 (G0030_07990) - 1703721..1704293 (-) 573 WP_180181971.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  G0030_RS08010 (G0030_07995) - 1704299..1704913 (-) 615 WP_016658223.1 TetR/AcrR family transcriptional regulator -
  G0030_RS08015 (G0030_08000) - 1704974..1705747 (-) 774 WP_168381360.1 TatD family hydrolase -
  G0030_RS08020 (G0030_08005) - 1705777..1706118 (-) 342 WP_005177501.1 PilZ domain-containing protein -
  G0030_RS08025 (G0030_08010) - 1706130..1707113 (-) 984 WP_005177500.1 DNA polymerase III, delta' subunit -
  G0030_RS08030 (G0030_08015) kdsB 1707122..1707886 (-) 765 WP_163142007.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12600.34 Da        Isoelectric Point: 6.2041

>NTDB_id=422240 G0030_RS08000 WP_242898261.1 1703234..1703578(-) (xcpV) [Acinetobacter indicus strain Q186-3_T]
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPN
VQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ

Nucleotide


Download         Length: 345 bp        

>NTDB_id=422240 G0030_RS08000 WP_242898261.1 1703234..1703578(-) (xcpV) [Acinetobacter indicus strain Q186-3_T]
ATGGTGGCACTGGCGATTTTTGCTACAGCTGCTATGGCGCTGACTCAAGTGGCCATGCAATATACCCAGTCGACCTCTCA
TGCCATTTTAAGAACCAAAGCGCAGTTTGTGGCCTTAAATGAACAGGCTCTAATGGAAATCCAGCAGGACTGGCTGACGG
GTACGCAATCAAAACAGGTCACCCTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCGACCATTAGCCCGAAT
GTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGTCAGGTTGAAGCCGGCATCACCCATTTGGTGTT
TTTTAATCACCGGGTGGCGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

76.786

98.246

0.754

Multiple sequence alignment