Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   G0030_RS01735 Genome accession   NZ_CP048681
Coordinates   366266..366901 (-) Length   211 a.a.
NCBI ID   WP_180182052.1    Uniprot ID   -
Organism   Acinetobacter indicus strain Q186-3_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 361266..371901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0030_RS01700 (G0030_01700) mlaE 361543..362322 (+) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  G0030_RS01705 (G0030_01705) - 362322..362993 (+) 672 WP_075168244.1 outer membrane lipid asymmetry maintenance protein MlaD -
  G0030_RS01710 (G0030_01710) - 363012..363644 (+) 633 WP_005180322.1 phospholipid-binding protein MlaC -
  G0030_RS01715 (G0030_01715) - 363656..363943 (+) 288 WP_045795311.1 STAS domain-containing protein -
  G0030_RS01720 (G0030_01720) - 364080..365093 (-) 1014 WP_005180320.1 CorA family divalent cation transporter -
  G0030_RS01725 (G0030_01725) - 365246..365839 (+) 594 WP_168398951.1 TIGR00730 family Rossman fold protein -
  G0030_RS01730 (G0030_01730) - 365842..366243 (+) 402 WP_034597959.1 NUDIX domain-containing protein -
  G0030_RS01735 (G0030_01735) comF 366266..366901 (-) 636 WP_180182052.1 ComF family protein Machinery gene
  G0030_RS01740 (G0030_01740) recG 366888..368933 (-) 2046 WP_180182051.1 ATP-dependent DNA helicase RecG -
  G0030_RS01745 (G0030_01745) - 368967..369782 (+) 816 WP_180182050.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24422.45 Da        Isoelectric Point: 9.2130

>NTDB_id=422227 G0030_RS01735 WP_180182052.1 366266..366901(-) (comF) [Acinetobacter indicus strain Q186-3_T]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANFYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QPLLAGSLCELAYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=422227 G0030_RS01735 WP_180182052.1 366266..366901(-) (comF) [Acinetobacter indicus strain Q186-3_T]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACTTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAATTGCATTAT
CAGCCTTTACTGGCGGGCAGCCTGTGTGAATTGGCCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCCTATCGCCGGGTGTTAATTGTCGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCGCTAAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55

Multiple sequence alignment