Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   G0029_RS14655 Genome accession   NZ_CP048670
Coordinates   3014209..3015774 (+) Length   521 a.a.
NCBI ID   WP_180059122.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12138 strain YH12138_T     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3009209..3020774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0029_RS14635 (G0029_14620) - 3009660..3010964 (+) 1305 WP_078192857.1 homoserine dehydrogenase -
  G0029_RS14640 (G0029_14625) thrC 3011027..3012166 (+) 1140 WP_180106773.1 threonine synthase -
  G0029_RS14645 (G0029_14630) - 3012289..3013338 (-) 1050 WP_143221671.1 serine hydrolase -
  G0029_RS14650 (G0029_14635) - 3013551..3014186 (+) 636 WP_078189449.1 response regulator -
  G0029_RS14655 (G0029_14640) pilS 3014209..3015774 (+) 1566 WP_180059122.1 sensor histidine kinase Regulator
  G0029_RS14660 (G0029_14645) pilR 3015794..3017221 (+) 1428 WP_180109852.1 sigma-54-dependent transcriptional regulator Regulator
  G0029_RS14665 (G0029_14650) - 3017244..3018419 (-) 1176 WP_180035951.1 S41 family peptidase -
  G0029_RS14670 (G0029_14655) gpmI 3018437..3019984 (-) 1548 WP_078192590.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59845.50 Da        Isoelectric Point: 6.7750

>NTDB_id=422214 G0029_RS14655 WP_180059122.1 3014209..3015774(+) (pilS) [Acinetobacter sp. YH12138 strain YH12138_T]
MTQRSIHSELNQYHLGLWYSAYRFIISACLLLVFLLTYTQFSSDYEYPRLYLYVLTIYLLFTSIQFMSLGRFKVRIPNQL
LLLFIVDVISLSLLTLAIDGPNLHLSLLFVITIFAASLLLDAQKALVITLIAVICVVYQLFLGSILEFTSLKNLTNSAIL
AFLFCVVYGSAQIAVKRFQLLENLNFSQSLELHRLQNINRYILEQIDTGYLVLDENCHVVLSNPAACHLLGMPNSYHHDQ
YPLYTTQPDLFELLKFEDLKSGEKFQFESQQSQYHIQVLVQKLVVPHQMLTLLILQDAQKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVHANDLYPQSDTEQQHMLNHMISRQAVRIDRIIQDTLNMVRNKETHPTRLNLEKFLPLFLQEDLADIQQ
NIRLNVQAKTLIDFDEAQFRQILINLIRNAIRHNNPDMSYIEVVARTDQKKVQIDVRDFGHGVALQNRAQLFQPFFSTEI
TGTGLGLYLAHSFCEANQAQLSYVEQKQGACFRIECLQAVI

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=422214 G0029_RS14655 WP_180059122.1 3014209..3015774(+) (pilS) [Acinetobacter sp. YH12138 strain YH12138_T]
ATGACACAGCGTTCAATCCATAGTGAATTGAACCAGTATCATTTGGGCCTTTGGTACAGTGCTTATCGCTTTATCATCAG
TGCCTGTCTGTTACTGGTCTTTTTACTGACCTACACTCAATTCAGTTCAGATTATGAATACCCACGTTTATACCTATATG
TATTGACGATTTATTTGCTGTTTACCAGCATTCAATTCATGTCACTTGGACGTTTCAAAGTCCGGATCCCAAACCAGTTA
CTACTGTTATTCATTGTAGATGTCATTTCGCTGAGCTTACTGACCTTAGCCATCGATGGACCTAATTTACATTTGAGTTT
GCTGTTTGTGATTACGATTTTTGCAGCATCCCTGTTATTAGATGCCCAAAAAGCTTTGGTCATCACCCTCATCGCTGTGA
TTTGCGTGGTGTATCAACTGTTTTTAGGTTCAATTCTTGAATTTACCTCACTCAAAAATTTAACCAACAGTGCGATTTTG
GCTTTTTTATTTTGTGTGGTGTATGGCAGTGCGCAAATTGCCGTGAAACGTTTCCAATTACTAGAAAATCTGAATTTTTC
GCAATCCTTAGAGCTCCATCGACTACAAAACATTAACCGCTATATCTTGGAGCAGATTGATACGGGCTATTTGGTGTTGG
ATGAAAACTGTCATGTGGTGCTGAGTAATCCTGCTGCTTGCCATTTACTCGGCATGCCAAATTCTTATCATCATGACCAA
TATCCGCTGTATACCACGCAGCCAGATTTATTTGAATTACTCAAATTTGAAGATTTAAAAAGCGGTGAAAAATTCCAATT
TGAATCCCAACAAAGCCAATACCACATTCAGGTACTCGTACAAAAACTCGTTGTGCCGCATCAAATGCTGACCTTGCTGA
TTTTACAAGATGCACAAAAACTCAATCAGCAAGTGCAACAACTAAAATTAGCCGCTTTAGGGCAACTCTCCGCCAGTATT
GCTCACGAAATTCGTAATCCTTTAGCGGCAATTGTGCATGCCAATGATTTATATCCGCAAAGTGATACCGAACAACAGCA
CATGTTGAATCATATGATTTCACGTCAAGCGGTGCGGATTGACCGGATTATTCAAGACACCCTAAATATGGTGCGCAATA
AGGAAACCCATCCGACTCGTCTGAATCTAGAAAAATTTTTACCGTTGTTCCTGCAAGAAGATCTGGCAGATATTCAACAG
AACATTCGGCTCAATGTACAAGCCAAAACTTTGATCGATTTTGATGAGGCACAGTTCAGACAAATTTTAATCAACCTAAT
TCGTAATGCGATTCGCCATAACAATCCGGACATGTCGTATATCGAAGTGGTGGCGCGTACGGATCAGAAAAAAGTCCAGA
TCGATGTCCGAGATTTCGGTCATGGGGTTGCTTTACAAAACCGCGCACAGTTATTTCAGCCATTTTTTAGTACCGAAATC
ACTGGAACTGGTTTAGGATTATATCTTGCTCATAGCTTCTGTGAAGCGAATCAAGCACAGCTTTCCTATGTAGAACAAAA
ACAGGGAGCTTGCTTTAGGATTGAGTGCTTACAAGCTGTTATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.832

96.929

0.551

Multiple sequence alignment