Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   G0029_RS13745 Genome accession   NZ_CP048670
Coordinates   2827370..2828002 (+) Length   210 a.a.
NCBI ID   WP_180106903.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12138 strain YH12138_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2822370..2833002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0029_RS13730 (G0029_13710) - 2823601..2824195 (-) 595 Protein_2671 methyltransferase domain-containing protein -
  G0029_RS13735 (G0029_13715) - 2824346..2825125 (-) 780 WP_180106906.1 NAD-dependent epimerase/dehydratase family protein -
  G0029_RS13740 (G0029_13720) recG 2825185..2827230 (+) 2046 WP_180106904.1 ATP-dependent DNA helicase RecG -
  G0029_RS13745 (G0029_13725) comF 2827370..2828002 (+) 633 WP_180106903.1 ComF family protein Machinery gene
  G0029_RS13750 (G0029_13730) - 2828046..2828453 (-) 408 WP_180106901.1 NUDIX hydrolase -
  G0029_RS13755 (G0029_13735) - 2828450..2829058 (-) 609 WP_180084603.1 TIGR00730 family Rossman fold protein -
  G0029_RS13760 (G0029_13740) - 2829214..2830227 (+) 1014 WP_078189297.1 CorA family divalent cation transporter -
  G0029_RS13765 (G0029_13745) - 2830308..2830568 (-) 261 WP_218945760.1 lipid asymmetry maintenance protein MlaB -
  G0029_RS13770 (G0029_13750) - 2830608..2831243 (-) 636 WP_078189299.1 phospholipid-binding protein MlaC -
  G0029_RS13775 (G0029_13755) - 2831261..2831941 (-) 681 WP_078189300.1 outer membrane lipid asymmetry maintenance protein MlaD -
  G0029_RS13780 (G0029_13760) mlaE 2831941..2832720 (-) 780 WP_078189301.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24461.62 Da        Isoelectric Point: 8.6888

>NTDB_id=422203 G0029_RS13745 WP_180106903.1 2827370..2828002(+) (comF) [Acinetobacter sp. YH12138 strain YH12138_T]
MLQSIQHFIQKGMQSISPCLLCGIDRQQHHSLCIDCWEQLPWFKQMVNRHEHSISCAFHYDFPIDRIIQSYKYEQQLHYH
NLLAQSLLSLRLARVQAIVPMPISVERLKDRGYNQMLLVAHMMAKQLCIPVWQPVIRQAQHAQKGLSRLERLENIEQQFI
INPTEKHRFRKVLIIDDVVTTGSSIHALSKLLHQLHCTQVYAACIAAAQP

Nucleotide


Download         Length: 633 bp        

>NTDB_id=422203 G0029_RS13745 WP_180106903.1 2827370..2828002(+) (comF) [Acinetobacter sp. YH12138 strain YH12138_T]
ATGCTCCAATCTATCCAACACTTCATCCAAAAAGGAATGCAGAGCATTTCCCCTTGCCTGCTTTGTGGTATCGATCGACA
ACAACATCATTCGCTTTGTATTGACTGCTGGGAACAACTGCCTTGGTTTAAACAAATGGTTAATCGCCATGAACACAGCA
TCTCTTGTGCCTTTCACTATGATTTTCCAATAGATCGCATCATCCAAAGCTATAAGTATGAGCAACAATTGCACTATCAC
AATTTACTGGCACAGAGCCTTTTAAGCTTGCGCTTAGCTAGAGTTCAAGCCATCGTCCCCATGCCTATTTCAGTAGAACG
CCTCAAAGACCGTGGGTACAACCAAATGCTACTCGTTGCACACATGATGGCAAAGCAATTATGCATCCCTGTTTGGCAAC
CCGTGATTCGTCAAGCACAGCACGCTCAAAAAGGCTTGAGTCGGCTAGAACGCCTAGAAAATATCGAACAACAATTTATT
ATCAACCCAACTGAAAAACACCGTTTCCGTAAAGTCCTCATCATTGATGATGTGGTGACCACGGGAAGTTCAATCCATGC
ATTAAGCAAGCTGTTACATCAGCTACATTGCACGCAGGTATATGCCGCATGCATTGCTGCGGCACAGCCTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(154-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.735

93.333

0.576
  comF Acinetobacter baumannii D1279779

61.224

93.333

0.571

Multiple sequence alignment