Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | G0029_RS10010 | Genome accession | NZ_CP048670 |
| Coordinates | 2057031..2057423 (-) | Length | 130 a.a. |
| NCBI ID | WP_078188947.1 | Uniprot ID | - |
| Organism | Acinetobacter sp. YH12138 strain YH12138_T | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2052031..2062423
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G0029_RS09980 (G0029_09970) | tadA | 2052214..2052765 (-) | 552 | WP_078188939.1 | tRNA adenosine(34) deaminase TadA | - |
| G0029_RS09985 (G0029_09975) | - | 2052773..2053894 (-) | 1122 | WP_078188941.1 | enoyl-CoA hydratase/isomerase family protein | - |
| G0029_RS09990 (G0029_09980) | ung | 2053891..2054604 (-) | 714 | WP_111885056.1 | uracil-DNA glycosylase | - |
| G0029_RS09995 (G0029_09985) | - | 2054641..2055237 (-) | 597 | WP_078193661.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| G0029_RS10000 (G0029_09990) | gspK | 2055368..2056315 (-) | 948 | WP_180106660.1 | type II secretion system minor pseudopilin GspK | - |
| G0029_RS10005 (G0029_09995) | xcpW | 2056355..2056984 (-) | 630 | WP_180109748.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| G0029_RS10010 (G0029_10000) | xcpV | 2057031..2057423 (-) | 393 | WP_078188947.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| G0029_RS10015 (G0029_10005) | - | 2057413..2057970 (-) | 558 | WP_078193664.1 | type II secretion system protein | - |
| G0029_RS10020 (G0029_10010) | - | 2057980..2058594 (-) | 615 | WP_078193665.1 | TetR/AcrR family transcriptional regulator | - |
| G0029_RS10025 (G0029_10015) | - | 2058637..2059410 (-) | 774 | WP_180022528.1 | TatD family hydrolase | - |
| G0029_RS10030 (G0029_10020) | - | 2059442..2059783 (-) | 342 | WP_111885061.1 | PilZ domain-containing protein | - |
| G0029_RS10035 (G0029_10025) | - | 2059799..2060782 (-) | 984 | WP_180059027.1 | DNA polymerase III subunit delta' | - |
| G0029_RS10040 (G0029_10030) | kdsB | 2060796..2061557 (-) | 762 | WP_180106666.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 14353.42 Da Isoelectric Point: 5.1186
>NTDB_id=422199 G0029_RS10010 WP_078188947.1 2057031..2057423(-) (xcpV) [Acinetobacter sp. YH12138 strain YH12138_T]
MRAKGFTLLEVMVALAIFATAAMALSNVAMQYTQSTAHAILRNKAQFVALNEIAKMEINREWMTGTASKQVTEQGEQWQI
DKKAQATISPNVQRIDIQVSLMNAETGDVEAGISSLVFFNYKAPLDENNN
MRAKGFTLLEVMVALAIFATAAMALSNVAMQYTQSTAHAILRNKAQFVALNEIAKMEINREWMTGTASKQVTEQGEQWQI
DKKAQATISPNVQRIDIQVSLMNAETGDVEAGISSLVFFNYKAPLDENNN
Nucleotide
Download Length: 393 bp
>NTDB_id=422199 G0029_RS10010 WP_078188947.1 2057031..2057423(-) (xcpV) [Acinetobacter sp. YH12138 strain YH12138_T]
ATGCGGGCTAAAGGGTTTACGCTACTTGAAGTCATGGTGGCATTGGCGATTTTTGCGACGGCGGCAATGGCTTTGTCTAA
TGTTGCGATGCAATATACACAGTCGACAGCACACGCAATTTTAAGAAATAAAGCACAATTCGTCGCGTTGAATGAAATCG
CTAAGATGGAAATCAATCGTGAATGGATGACAGGTACTGCATCTAAACAAGTCACTGAACAAGGCGAACAATGGCAAATT
GACAAAAAAGCCCAAGCCACCATTAGTCCAAATGTACAACGTATTGATATCCAAGTGAGTTTGATGAATGCTGAAACAGG
CGATGTTGAAGCAGGGATTAGCAGTTTGGTGTTCTTTAACTATAAGGCTCCGTTGGATGAAAATAATAACTAG
ATGCGGGCTAAAGGGTTTACGCTACTTGAAGTCATGGTGGCATTGGCGATTTTTGCGACGGCGGCAATGGCTTTGTCTAA
TGTTGCGATGCAATATACACAGTCGACAGCACACGCAATTTTAAGAAATAAAGCACAATTCGTCGCGTTGAATGAAATCG
CTAAGATGGAAATCAATCGTGAATGGATGACAGGTACTGCATCTAAACAAGTCACTGAACAAGGCGAACAATGGCAAATT
GACAAAAAAGCCCAAGCCACCATTAGTCCAAATGTACAACGTATTGATATCCAAGTGAGTTTGATGAATGCTGAAACAGG
CGATGTTGAAGCAGGGATTAGCAGTTTGGTGTTCTTTAACTATAAGGCTCCGTTGGATGAAAATAATAACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
72.727 |
93.077 |
0.677 |