Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | G0028_RS07305 | Genome accession | NZ_CP048659 |
| Coordinates | 1520533..1520922 (+) | Length | 129 a.a. |
| NCBI ID | WP_180045385.1 | Uniprot ID | - |
| Organism | Acinetobacter piscicola strain YH12207_T | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1515533..1525922
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G0028_RS07275 (G0028_07265) | kdsB | 1516268..1517029 (+) | 762 | WP_180045344.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| G0028_RS07280 (G0028_07270) | - | 1517048..1518028 (+) | 981 | WP_180045384.1 | DNA polymerase III subunit delta' | - |
| G0028_RS07285 (G0028_07275) | - | 1518044..1518385 (+) | 342 | WP_130073031.1 | PilZ domain-containing protein | - |
| G0028_RS07290 (G0028_07280) | - | 1518417..1519190 (+) | 774 | WP_180045345.1 | TatD family hydrolase | - |
| G0028_RS07295 (G0028_07285) | - | 1519239..1519853 (+) | 615 | WP_130072600.1 | TetR/AcrR family transcriptional regulator | - |
| G0028_RS07300 (G0028_07290) | - | 1519857..1520423 (+) | 567 | WP_180045346.1 | type II secretion system protein | - |
| G0028_RS07305 (G0028_07295) | xcpV | 1520533..1520922 (+) | 390 | WP_180045385.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| G0028_RS07310 (G0028_07300) | xcpW | 1520937..1521581 (+) | 645 | WP_130072596.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| G0028_RS07315 (G0028_07305) | gspK | 1521594..1522541 (+) | 948 | WP_130072594.1 | type II secretion system minor pseudopilin GspK | - |
| G0028_RS07320 (G0028_07310) | - | 1522748..1523344 (+) | 597 | WP_130072591.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| G0028_RS07325 (G0028_07315) | ung | 1523431..1524144 (+) | 714 | WP_130072588.1 | uracil-DNA glycosylase | - |
| G0028_RS07330 (G0028_07320) | - | 1524141..1525265 (+) | 1125 | WP_130072585.1 | enoyl-CoA hydratase/isomerase family protein | - |
| G0028_RS07335 (G0028_07325) | tadA | 1525274..1525795 (+) | 522 | WP_180045347.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14210.35 Da Isoelectric Point: 8.5289
>NTDB_id=422167 G0028_RS07305 WP_180045385.1 1520533..1520922(+) (xcpV) [Acinetobacter piscicola strain YH12207_T]
MNRILGFTLIEVVVALAIFVVAAMALTKVAMQYTQSTANAILRTKAQFVAQNQVALMEINQAKLTGTQSEQITSQGETWQ
VDKKAESTISPNIQKIEIQISLYNPETHKVEAGITNAVFFNNPQKNVQS
MNRILGFTLIEVVVALAIFVVAAMALTKVAMQYTQSTANAILRTKAQFVAQNQVALMEINQAKLTGTQSEQITSQGETWQ
VDKKAESTISPNIQKIEIQISLYNPETHKVEAGITNAVFFNNPQKNVQS
Nucleotide
Download Length: 390 bp
>NTDB_id=422167 G0028_RS07305 WP_180045385.1 1520533..1520922(+) (xcpV) [Acinetobacter piscicola strain YH12207_T]
TTGAATCGTATTTTAGGGTTTACCCTCATTGAGGTTGTGGTGGCATTGGCAATTTTTGTGGTGGCTGCCATGGCGCTGAC
CAAAGTAGCAATGCAATATACTCAGTCTACAGCAAATGCGATTTTAAGAACAAAAGCGCAATTTGTGGCACAAAATCAAG
TCGCGTTGATGGAAATTAATCAAGCGAAATTGACAGGAACCCAGTCTGAACAAATTACGTCGCAAGGTGAAACCTGGCAA
GTCGATAAAAAAGCTGAAAGCACGATCAGTCCAAACATTCAAAAAATAGAGATCCAAATTAGTTTATATAATCCTGAAAC
TCATAAAGTGGAAGCAGGTATTACCAATGCTGTGTTTTTTAACAATCCACAAAAAAATGTTCAATCCTAG
TTGAATCGTATTTTAGGGTTTACCCTCATTGAGGTTGTGGTGGCATTGGCAATTTTTGTGGTGGCTGCCATGGCGCTGAC
CAAAGTAGCAATGCAATATACTCAGTCTACAGCAAATGCGATTTTAAGAACAAAAGCGCAATTTGTGGCACAAAATCAAG
TCGCGTTGATGGAAATTAATCAAGCGAAATTGACAGGAACCCAGTCTGAACAAATTACGTCGCAAGGTGAAACCTGGCAA
GTCGATAAAAAAGCTGAAAGCACGATCAGTCCAAACATTCAAAAAATAGAGATCCAAATTAGTTTATATAATCCTGAAAC
TCATAAAGTGGAAGCAGGTATTACCAATGCTGTGTTTTTTAACAATCCACAAAAAAATGTTCAATCCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
75 |
93.023 |
0.698 |