Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   G0028_RS04705 Genome accession   NZ_CP048659
Coordinates   974493..979001 (+) Length   1502 a.a.
NCBI ID   WP_180046714.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 969493..984001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS04680 (G0028_04670) - 969999..970643 (-) 645 WP_227554772.1 hypothetical protein -
  G0028_RS04685 (G0028_04675) pilG 970925..971302 (+) 378 WP_130073892.1 twitching motility response regulator PilG Regulator
  G0028_RS04690 (G0028_04680) - 971329..971697 (+) 369 WP_130073891.1 response regulator -
  G0028_RS04695 (G0028_04685) - 971700..972233 (+) 534 WP_130073890.1 chemotaxis protein CheW -
  G0028_RS04700 (G0028_04690) - 972283..974355 (+) 2073 WP_180046716.1 methyl-accepting chemotaxis protein -
  G0028_RS04705 (G0028_04695) chpA 974493..979001 (+) 4509 WP_180046714.1 Hpt domain-containing protein Regulator
  G0028_RS04710 (G0028_04700) - 979008..979472 (+) 465 WP_413782951.1 hypothetical protein -
  G0028_RS04715 (G0028_04705) dapE 979515..980648 (-) 1134 WP_180046710.1 succinyl-diaminopimelate desuccinylase -
  G0028_RS04720 (G0028_04710) - 980798..980938 (-) 141 WP_130074048.1 entericidin A/B family lipoprotein -
  G0028_RS04725 (G0028_04715) - 981057..981923 (-) 867 WP_180046708.1 DUF1853 family protein -
  G0028_RS04730 (G0028_04720) - 982000..982368 (+) 369 WP_130073884.1 YbaN family protein -

Sequence

Protein


Download         Length: 1502 a.a.        Molecular weight: 169646.77 Da        Isoelectric Point: 4.4251

>NTDB_id=422163 G0028_RS04705 WP_180046714.1 974493..979001(+) (chpA) [Acinetobacter piscicola strain YH12207_T]
MKKILKDLVENINLPQDEFVDQDPEILEIFVEEIEEIIENVQPLLTQWLSEPSDAELLTVIRRNFHTLKGSGRMVGAKSS
GELAWTVEDTLNRVIAKSLSLSQPLQQYVNAVFNIYKFKLHDDFAKAQAHQLDLRPLVLLGQQIQQNLSIEPALEELLAL
SAQLNSADVLTGLEYSTTDDAAEVIAQAKPTTAMVESVIPESPVTIPEQPEVISSEKTSLENHKEAVDEAEDRRFLAETI
AIFIEESEEHLASIDTFLSIEQHTADHYNRLIRALHTLRGSSAMAHVDDVFHASSKVEQLFKILLKDDTQHSTNENALLI
HYTEFVRDYLHTLVQENSSEQQKVICQKFNDAWERYDFQTEYLESNEHQQDLVSQLVDLDIEHLLDAEFDFDQKAKVEYP
AYFESLMREADVLIEHTDNRAAQGIHDISLALKVAYEHILADQRLLNTDYVFEIFNQVHQEFIHLFDALASGQRVVLNEN
GQHVLEQLYDYVTQDIEQIEAVDSAQTESLETVDLETITVPETAATAEFNSNQIFNLIAKDQQYLHSADSFKDFDAEVLD
IFLEEADELLVGIDQDLTVWFSDSQNLTSLNNLMRYLHTLKGGANMVQAEHIGLIAHHLESIYERIIKQQIPVNAALMQT
IRMVQDEIAERIQVIREQGIDYPAVHLLGLLQAIEKQQPIKLAFDTSDEPSAVAEPEHVGQSDSIQQFEAQAPVDEVGSV
AAIQNDSSVEDVAQDAFAEEAEELLARADDILDQWFDERSSRSLLLQLQRIAHTLKGGAKMVGYTQISDIAYELENTFER
FGLHNFNSNAYDQLLSKAFNWLKNAILSNNYEHFDSIKTGLKNIQYVDVSAQLPEKIISNDIFWDNQSVEFIQGDGTEPP
SMLGEWGQVEQVENSNEMIRISADLIEKMIDLSGENSINRSRIEMDLGQFGNTLSEMELAIQRLADQLRRMEGELESQII
AKHGDSNSRYADFDPLEMDQYSSLNQLSKSLAESASDLVDFKSTLAEKIRDTEGLLLQQARIQAEIQEGLMRTRLVPFTR
LLPRLQRLVRQTASSLNRPTELIVHNTEGELDRNILEKLMSPLEHMLRNAIDHGIEETSIREQCNKPATGRIELNISRQG
TDVLVEFKDDGKGIDPKIIKAKALQNGLIQADQSVSDEEILQYIFHHGFSTAQQVTQISGRGVGLDVVQSEIKSLGGQVS
VSSVLGQGSTFTIRVPTTVAVSDALMVKVGDQQFAVPLSQIDRIVRIAPSTLEEYFHSNKEDFVIDQQRYNLRYMAEFVA
HQPMPRFSGIAHSLPVLLIKNNSGKNTALLVDQLIGSRSQIVVKPIGKQFTSIGAVAGATILGDGQVCLILDAQNIARQA
LSNKRQAANDQRELTRHRDQRHLVMIVDDSVTVRKVTSRLLERHNFDVITAKDGVDAIEQLENVKPDLMLLDIEMPRMDG
FEVTNWIRHHEIHHELPIIMITSRTGEKHRERAFSLGVTNYMGKPFQEADLLENIQNLLVAQ

Nucleotide


Download         Length: 4509 bp        

>NTDB_id=422163 G0028_RS04705 WP_180046714.1 974493..979001(+) (chpA) [Acinetobacter piscicola strain YH12207_T]
ATGAAAAAAATATTAAAAGATTTAGTTGAAAATATAAATCTTCCCCAAGACGAATTTGTGGACCAAGATCCTGAAATTTT
AGAAATCTTTGTGGAAGAGATCGAAGAGATCATCGAAAATGTTCAGCCGTTGTTAACACAATGGTTAAGTGAACCGTCAG
ATGCTGAACTTTTGACTGTAATTCGCCGTAATTTCCATACTTTGAAAGGGTCTGGTCGTATGGTGGGCGCAAAGTCATCA
GGTGAGTTGGCTTGGACGGTTGAAGATACATTAAATCGTGTGATTGCTAAAAGTTTGAGTTTATCTCAACCATTACAGCA
ATATGTCAATGCGGTATTTAATATTTATAAATTTAAGCTGCATGATGATTTTGCCAAAGCACAAGCGCATCAGTTAGATT
TAAGACCTTTGGTTTTGTTGGGACAACAGATTCAACAAAATCTGAGTATTGAGCCAGCACTTGAAGAATTACTTGCACTT
TCAGCGCAATTAAATAGTGCAGATGTTTTGACAGGCTTAGAATATTCTACAACCGATGATGCGGCTGAGGTTATAGCACA
AGCAAAACCAACGACTGCTATGGTAGAGTCTGTAATTCCTGAAAGTCCTGTGACTATCCCAGAACAACCAGAAGTTATTT
CGTCTGAAAAAACTTCACTTGAGAATCACAAGGAGGCGGTTGACGAAGCTGAGGATCGTCGATTTCTGGCCGAGACTATT
GCAATCTTTATTGAAGAGTCTGAAGAACATCTGGCGTCAATTGACACGTTCTTAAGCATTGAACAGCATACCGCAGATCA
CTATAATCGTTTGATTCGTGCATTACACACCTTGCGTGGTAGTTCAGCGATGGCGCATGTGGATGATGTATTTCATGCGA
GTAGTAAAGTTGAACAATTATTTAAAATTTTGTTAAAAGACGATACACAGCATAGCACCAATGAAAATGCACTTTTAATA
CATTATACTGAATTTGTTCGAGATTATTTGCATACACTGGTGCAAGAAAATAGTTCAGAACAACAAAAAGTTATTTGTCA
AAAGTTTAATGATGCTTGGGAACGTTATGATTTCCAAACTGAATATTTAGAAAGTAATGAGCATCAGCAAGATCTCGTTT
CTCAACTGGTTGACTTAGATATTGAGCATTTGCTTGATGCTGAATTTGATTTTGATCAAAAAGCCAAAGTTGAATATCCA
GCATATTTTGAAAGCTTAATGCGTGAAGCTGATGTATTAATTGAACATACAGACAACCGCGCAGCACAAGGTATTCATGA
TATTAGCTTGGCATTAAAAGTTGCTTATGAACATATATTGGCTGATCAACGTTTACTGAATACAGATTATGTATTTGAGA
TTTTTAATCAAGTACATCAAGAGTTTATTCATCTATTTGATGCATTAGCATCTGGTCAACGCGTCGTTTTAAATGAAAAT
GGTCAACATGTTTTAGAACAATTGTATGACTATGTTACACAAGACATTGAACAGATTGAAGCTGTGGATTCTGCACAGAC
AGAGTCACTTGAAACTGTAGATTTGGAAACGATCACTGTTCCTGAAACTGCAGCGACAGCTGAATTTAATAGCAATCAAA
TCTTTAATCTGATTGCAAAAGATCAGCAATATTTACATTCTGCCGATAGTTTTAAAGACTTTGATGCTGAGGTCTTGGAT
ATTTTCCTTGAAGAAGCAGATGAGCTGTTGGTGGGGATTGATCAGGATTTAACGGTATGGTTCTCTGATAGCCAAAATCT
GACGTCATTAAATAATTTGATGCGTTATTTGCATACCTTAAAGGGTGGTGCGAATATGGTACAAGCAGAGCATATTGGTC
TGATTGCCCATCATTTAGAATCAATTTATGAACGAATTATTAAGCAACAAATTCCTGTAAATGCGGCGTTGATGCAAACC
ATTCGTATGGTTCAGGATGAAATTGCAGAACGTATTCAAGTGATTCGTGAACAAGGGATTGATTATCCAGCTGTTCATCT
TTTAGGTCTTTTGCAAGCTATTGAAAAGCAACAGCCGATCAAACTTGCATTCGATACATCGGATGAGCCTTCTGCCGTTG
CAGAGCCTGAACATGTAGGGCAGTCTGATTCTATTCAGCAATTTGAAGCACAAGCGCCAGTTGATGAAGTGGGATCTGTC
GCTGCGATACAAAATGATTCTTCAGTCGAAGATGTGGCACAAGATGCTTTTGCAGAAGAAGCTGAAGAATTATTGGCACG
TGCTGATGATATTTTAGATCAATGGTTTGATGAGCGTAGTAGTCGTAGTCTATTATTGCAATTACAACGTATTGCCCACA
CTTTAAAAGGTGGTGCAAAAATGGTTGGTTATACACAAATATCTGATATTGCATATGAATTAGAAAATACATTTGAACGT
TTTGGTTTGCATAATTTCAACTCAAATGCTTATGATCAGTTATTGAGTAAAGCATTTAATTGGTTGAAAAATGCCATTTT
GTCGAATAATTATGAGCATTTTGATTCGATCAAAACGGGTCTTAAAAATATTCAGTATGTTGATGTATCGGCACAATTAC
CTGAAAAAATAATTAGCAATGATATCTTTTGGGATAATCAGAGCGTTGAGTTTATTCAAGGTGATGGTACTGAACCACCA
TCAATGTTGGGTGAATGGGGGCAAGTTGAGCAAGTTGAAAACAGCAATGAGATGATTCGTATCTCGGCAGACTTGATTGA
AAAAATGATCGATTTGTCGGGTGAGAACTCAATTAACCGTTCACGTATTGAAATGGATTTGGGGCAGTTTGGTAATACGC
TGTCGGAAATGGAATTGGCGATTCAACGTTTGGCAGATCAGTTACGCCGAATGGAAGGGGAATTAGAGTCACAAATTATT
GCTAAGCATGGTGATTCAAATTCACGTTATGCTGATTTCGATCCACTTGAAATGGACCAATATTCTTCTTTAAATCAGTT
ATCTAAGTCACTTGCCGAATCTGCATCGGACTTGGTGGATTTTAAGAGCACATTGGCTGAAAAAATTCGTGATACAGAAG
GTTTATTGTTACAACAAGCACGTATTCAAGCTGAAATTCAAGAAGGTTTAATGCGTACTCGTTTGGTACCATTTACCCGC
TTATTACCCCGTTTACAACGTTTGGTACGTCAAACGGCTTCAAGTTTAAATCGACCAACCGAGCTGATTGTACATAATAC
AGAAGGTGAATTGGATCGTAATATTCTTGAAAAGCTCATGTCTCCATTAGAACACATGTTACGTAATGCAATTGACCATG
GTATTGAAGAAACGTCTATTCGCGAGCAATGTAATAAGCCTGCAACAGGACGCATTGAGCTGAATATTAGTCGTCAAGGT
ACAGATGTCTTGGTTGAGTTTAAGGATGATGGAAAGGGAATTGATCCGAAAATCATCAAAGCCAAAGCATTGCAAAATGG
TTTGATTCAAGCTGATCAAAGCGTGTCTGATGAAGAAATATTGCAATATATTTTTCATCATGGCTTCAGTACTGCGCAAC
AAGTTACTCAGATTTCTGGGCGTGGTGTTGGATTGGATGTGGTACAAAGTGAAATTAAGTCACTTGGTGGGCAAGTCTCA
GTGTCTTCGGTACTCGGTCAAGGTTCAACTTTTACCATTCGTGTACCAACTACTGTTGCCGTGAGTGATGCCTTGATGGT
GAAAGTGGGTGATCAGCAATTTGCTGTACCATTATCACAAATTGACCGTATTGTACGTATTGCACCAAGTACCTTGGAAG
AATATTTCCATAGTAATAAAGAAGACTTTGTCATCGATCAGCAACGCTATAATTTACGTTATATGGCTGAGTTTGTGGCG
CACCAACCAATGCCACGTTTCTCCGGTATTGCACATTCTTTACCTGTGCTGCTGATTAAAAATAACAGCGGTAAAAATAC
AGCATTATTGGTCGATCAGTTGATTGGTTCACGCTCACAGATTGTTGTAAAACCAATTGGCAAGCAATTTACATCAATTG
GCGCTGTGGCCGGTGCAACAATTTTGGGTGATGGTCAAGTCTGTTTAATTTTAGATGCACAAAATATTGCACGTCAGGCT
TTGAGTAATAAACGTCAAGCAGCGAATGATCAACGAGAGTTAACGCGTCACCGTGATCAGCGTCATTTGGTAATGATTGT
GGATGACTCAGTGACAGTACGTAAAGTGACTTCGCGTTTGCTTGAACGTCATAACTTTGATGTCATCACTGCCAAAGATG
GTGTAGATGCTATTGAGCAGTTGGAAAATGTCAAACCAGACTTAATGTTGCTTGATATTGAAATGCCACGTATGGATGGT
TTTGAGGTGACCAATTGGATTCGCCACCATGAAATTCATCATGAGTTGCCAATCATTATGATTACTTCAAGAACAGGTGA
AAAACATCGTGAACGTGCATTTAGTTTAGGTGTGACGAATTATATGGGTAAACCATTCCAAGAAGCTGATTTGTTGGAAA
ATATTCAGAATTTGTTGGTTGCACAATAA

Domains

Predicted by InterproScan.

CheW-like domain (CheW)

(1224-1359)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(1082-1217)

Response regulator receiver domain (Response_reg)

(1384-1495)

Hpt domain (Hpt)

(735-799)

Hpt domain (Hpt)

(25-109)

Hpt domain (Hpt)

(239-318)

Hpt domain (Hpt)

(557-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

57.834

100

0.597

Multiple sequence alignment