Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   G0028_RS02920 Genome accession   NZ_CP048659
Coordinates   601235..602119 (+) Length   294 a.a.
NCBI ID   WP_180046437.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 596235..607119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS02890 (G0028_02895) - 596782..597177 (-) 396 WP_174493358.1 hypothetical protein -
  G0028_RS02895 (G0028_02900) - 597348..597791 (-) 444 WP_180046439.1 hypothetical protein -
  G0028_RS02900 (G0028_02905) - 597794..598669 (-) 876 WP_130074383.1 acyl-CoA thioesterase -
  G0028_RS02905 (G0028_02910) - 598805..599380 (-) 576 WP_130074384.1 xanthine phosphoribosyltransferase -
  G0028_RS02910 (G0028_02915) - 599483..600187 (-) 705 WP_130074385.1 DUF3108 domain-containing protein -
  G0028_RS02915 (G0028_02920) - 600335..601015 (-) 681 WP_174493354.1 hypothetical protein -
  G0028_RS02920 (G0028_02925) tonB2 601235..602119 (+) 885 WP_180046437.1 energy transducer TonB Machinery gene
  G0028_RS02925 (G0028_02930) - 602127..602747 (-) 621 WP_165353080.1 DUF3841 domain-containing protein -
  G0028_RS02930 (G0028_02935) - 602753..603862 (-) 1110 WP_180046435.1 mechanosensitive ion channel family protein -
  G0028_RS02935 (G0028_02940) ybeY 604041..604526 (-) 486 WP_180046433.1 rRNA maturation RNase YbeY -
  G0028_RS02940 (G0028_02945) - 604560..605636 (-) 1077 WP_130074391.1 PhoH family protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33629.40 Da        Isoelectric Point: 7.5645

>NTDB_id=422157 G0028_RS02920 WP_180046437.1 601235..602119(+) (tonB2) [Acinetobacter piscicola strain YH12207_T]
MFKKMKISSKAFLPWWEDNIFLSAVVVAIALHLVFISLQFAEPKEHDLHHSKDIAVTLRPSADEVKDADFLAQEDQQGSG
VFREKHRMSSDMPAQTKDLSVGEQELEALEKVQQKRELKFEEKVLMTVLSWQKQAEQNERKKAMDELQSQFQAKAAMVAS
LEAQYLQKQQNFSKQQKIKTVDGIQAKKDASAAYLEKFRAKVELYGNRYYPDEAKQQRLSGEVRLMVILNASGGIRAIRL
IESSGHPILDEAAKNSVRKGAPFGNFDANMKDISELRIIRTWRFDPAESEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=422157 G0028_RS02920 WP_180046437.1 601235..602119(+) (tonB2) [Acinetobacter piscicola strain YH12207_T]
ATGTTTAAAAAAATGAAGATTTCATCTAAGGCTTTTTTACCTTGGTGGGAAGACAATATCTTCTTAAGTGCTGTCGTAGT
GGCGATTGCACTGCATCTGGTTTTTATTTCATTACAGTTTGCTGAGCCCAAAGAACATGATTTACATCATAGCAAAGACA
TTGCTGTGACCTTGCGCCCAAGTGCAGATGAAGTCAAAGATGCAGACTTTTTAGCGCAAGAAGACCAACAAGGCTCTGGT
GTATTTCGTGAAAAGCACCGTATGTCGAGTGATATGCCCGCACAGACAAAAGATCTAAGCGTTGGTGAGCAAGAGTTAGA
AGCGTTGGAAAAAGTACAGCAAAAGCGTGAATTAAAGTTTGAAGAAAAAGTATTGATGACTGTGCTCAGTTGGCAGAAAC
AAGCAGAACAAAATGAACGTAAAAAAGCCATGGATGAGCTGCAAAGTCAATTTCAAGCCAAAGCAGCCATGGTGGCGAGT
TTAGAAGCACAATATTTACAAAAACAGCAAAATTTTAGTAAACAGCAAAAAATTAAAACTGTGGATGGTATTCAAGCGAA
AAAAGACGCTTCAGCAGCTTATTTGGAGAAGTTTCGTGCCAAAGTAGAATTGTATGGTAACCGTTATTATCCTGATGAGG
CAAAACAACAACGCTTATCGGGTGAAGTTCGTTTAATGGTGATCTTGAATGCTTCAGGTGGTATTCGTGCGATTCGTTTG
ATTGAAAGTTCAGGGCATCCAATTTTAGATGAAGCTGCAAAAAACTCAGTGCGTAAAGGTGCGCCGTTTGGAAATTTTGA
TGCCAATATGAAAGATATTTCTGAGCTGAGAATTATACGAACTTGGCGTTTTGATCCTGCTGAATCTGAGTTTGAAGTGC
ATTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.22

100

0.735

Multiple sequence alignment