Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   G0028_RS02510 Genome accession   NZ_CP048659
Coordinates   533997..534632 (-) Length   211 a.a.
NCBI ID   WP_174493382.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 528997..539632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS02480 (G0028_02480) - 529316..529948 (+) 633 WP_130074322.1 phospholipid-binding protein MlaC -
  G0028_RS02485 (G0028_02485) - 529970..530257 (+) 288 WP_130074323.1 lipid asymmetry maintenance protein MlaB -
  G0028_RS02490 (G0028_02490) - 530417..531430 (-) 1014 WP_130074324.1 CorA family divalent cation transporter -
  G0028_RS02495 (G0028_02495) - 531586..532200 (+) 615 WP_174493384.1 TIGR00730 family Rossman fold protein -
  G0028_RS02500 (G0028_02500) - 532311..532703 (+) 393 WP_174493383.1 NUDIX hydrolase -
  G0028_RS02505 (G0028_02505) - 532954..533940 (+) 987 WP_111885219.1 IS110 family transposase -
  G0028_RS02510 (G0028_02510) comF 533997..534632 (-) 636 WP_174493382.1 ComF family protein Machinery gene
  G0028_RS02515 (G0028_02515) recG 534909..536954 (-) 2046 WP_180046737.1 ATP-dependent DNA helicase RecG -
  G0028_RS02520 (G0028_02520) - 537014..537766 (+) 753 WP_130074329.1 NAD(P)H-binding protein -
  G0028_RS02525 (G0028_02525) - 537842..538354 (+) 513 WP_180046739.1 alpha-ketoglutarate-dependent dioxygenase AlkB -
  G0028_RS02530 (G0028_02530) - 538721..539245 (-) 525 WP_130074332.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24509.67 Da        Isoelectric Point: 9.3869

>NTDB_id=422156 G0028_RS02510 WP_174493382.1 533997..534632(-) (comF) [Acinetobacter piscicola strain YH12207_T]
MLQFINQLLYKGVQSISPCLLCGIDRQQQHSLCNDCWEQLPWFKQHTIRHEQNILCAHHYDFPINRIIQTYKYEQQLQYQ
NLLAHSLLNLRLPKVQAIVPMPISTERLKDRGYNQMLLIAKIMARELKVPVWQPVIRAAQHSQKGLSRIERLENIENQFQ
IIPAEKRKYKKVLIIDDVVTTGSSIHALNQALEKLGCQQIYSACIAVAGTK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=422156 G0028_RS02510 WP_174493382.1 533997..534632(-) (comF) [Acinetobacter piscicola strain YH12207_T]
ATGCTCCAATTTATCAACCAACTACTCTACAAAGGCGTACAAAGCATTTCCCCTTGCCTGCTTTGTGGTATCGACCGCCA
ACAACAGCATTCACTCTGCAATGATTGTTGGGAACAACTGCCTTGGTTTAAACAACATACTATACGCCATGAACAAAATA
TCCTTTGCGCACATCACTATGATTTTCCAATCAATCGCATTATTCAAACCTATAAATACGAACAACAACTGCAATATCAA
AACTTACTTGCTCACAGTCTTTTAAATTTAAGACTTCCAAAAGTCCAAGCCATCGTGCCCATGCCAATTTCTACAGAACG
CTTAAAAGATCGTGGCTATAACCAAATGCTGCTCATTGCCAAAATTATGGCAAGAGAACTCAAAGTCCCTGTCTGGCAAC
CTGTGATTCGTGCAGCACAACATTCACAAAAAGGGTTAAGTCGAATCGAACGACTGGAAAATATTGAAAACCAATTTCAA
ATCATCCCTGCTGAAAAACGAAAATATAAAAAAGTATTGATTATTGATGATGTAGTGACAACAGGAAGTTCAATTCATGC
ACTCAACCAAGCACTAGAAAAATTAGGTTGTCAGCAGATTTATAGTGCATGTATCGCTGTTGCTGGAACAAAATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

59.716

100

0.597
  comF Acinetobacter baumannii D1279779

59.242

100

0.592

Multiple sequence alignment