Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   G0028_RS01850 Genome accession   NZ_CP048659
Coordinates   391826..393400 (-) Length   524 a.a.
NCBI ID   WP_130074532.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 386826..398400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS01835 (G0028_01835) gpmI 387465..389012 (+) 1548 WP_180044939.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  G0028_RS01840 (G0028_01840) - 389031..390206 (+) 1176 WP_180044938.1 S41 family peptidase -
  G0028_RS01845 (G0028_01845) pilR 390399..391808 (-) 1410 WP_180044937.1 sigma-54-dependent transcriptional regulator Regulator
  G0028_RS01850 (G0028_01850) pilS 391826..393400 (-) 1575 WP_130074532.1 sensor histidine kinase Regulator
  G0028_RS01855 (G0028_01855) - 393423..394058 (-) 636 WP_130074492.1 response regulator -
  G0028_RS01860 (G0028_01860) - 394290..395354 (+) 1065 WP_130074493.1 D-alanyl-D-alanine endopeptidase -
  G0028_RS01865 (G0028_01865) thrC 395472..396611 (-) 1140 WP_107008527.1 threonine synthase -
  G0028_RS01870 (G0028_01870) - 396748..398052 (-) 1305 WP_107008526.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 59913.77 Da        Isoelectric Point: 6.5836

>NTDB_id=422152 G0028_RS01850 WP_130074532.1 391826..393400(-) (pilS) [Acinetobacter piscicola strain YH12207_T]
MWPAVSNSLQQTIYRLGTLYSVYRFTLSFCLIIIFLFTSEHNGINYLHSKLYFDSLIIFGFLSFLQLLSLKFFTRYISEQ
LFAIFLVDIIFLSTLTFSLGGPSLSISLLFVIMVFSANFLLKKNEALIVTLVSVIAVIYQQFVGSLFDVSNLNNISNSAL
LAFLFFLVYGIGQVSIQRFRVLETINSLQSLELLKLQNINRYILEQIELGYLVLDENYRIVVCNPAACSLLGIAPLYAYA
NEQYSLVKFQKELFDLLQIKTLEEGQRFQFQSNQSHYTVDIRVQKLIVPHQALTLLTLEDSQKINQKVQQLKLASLGQLS
ASIAHEIRNPLAAIAQANELSLDADLEQRQMLNAMIERQSQRINQIIQQTLDMAKNKKTIMSDIQLNIFFKDLFINDLAD
VKNQIALSLPQNYMIQFDESQLRQVLINLVRNAIRHNAHDADFIQILVHAEAQHLYIDVIDFGEGIARQNLAQLFQPFFT
TEINGTGLGLYLSQSICEANQAKLMYIEQKQKGACFRIECPLKI

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=422152 G0028_RS01850 WP_130074532.1 391826..393400(-) (pilS) [Acinetobacter piscicola strain YH12207_T]
ATGTGGCCTGCGGTATCCAATTCACTTCAACAAACTATTTATCGGTTAGGCACATTATATTCAGTTTATAGATTTACTTT
ATCTTTTTGTTTAATCATTATTTTTTTGTTCACATCTGAACATAATGGAATCAACTACCTACATAGTAAATTGTATTTTG
ATAGCTTAATTATTTTTGGCTTTCTGAGTTTTCTACAATTACTCTCTCTGAAATTTTTTACTCGATATATATCTGAGCAG
CTTTTTGCAATTTTTCTCGTCGATATTATATTTTTAAGTACGCTGACTTTTTCTTTAGGTGGCCCTAGTCTTTCAATCAG
TTTGTTATTTGTCATCATGGTTTTTTCAGCCAATTTTTTATTGAAAAAAAATGAAGCACTGATTGTGACACTTGTTTCTG
TTATTGCTGTTATTTATCAACAGTTTGTTGGCTCATTATTTGATGTATCTAACCTGAATAATATTAGCAATAGTGCACTG
TTGGCTTTTCTATTCTTTCTCGTCTATGGTATTGGGCAAGTCTCGATTCAGCGCTTTAGAGTATTAGAAACGATTAACTC
ATTGCAGTCTTTAGAATTATTAAAACTGCAAAATATTAACCGTTATATTTTAGAACAAATTGAACTCGGCTATTTGGTTT
TAGACGAAAATTATCGCATTGTGGTTTGTAATCCTGCGGCATGTTCATTATTAGGCATCGCCCCATTATATGCTTATGCA
AATGAACAGTATTCACTGGTCAAATTTCAAAAAGAGCTATTTGATCTACTACAGATCAAAACTTTGGAAGAAGGACAACG
TTTCCAATTTCAATCGAATCAAAGTCATTATACCGTGGATATTCGAGTGCAAAAACTCATTGTGCCACATCAAGCATTAA
CGCTGTTGACCTTAGAAGATTCACAAAAAATAAATCAAAAAGTGCAACAACTCAAATTGGCTTCTCTTGGACAACTCTCT
GCAAGTATTGCCCATGAAATTCGTAATCCCTTAGCCGCGATTGCCCAAGCCAATGAATTAAGTTTAGATGCAGATCTTGA
GCAACGCCAAATGCTGAATGCAATGATTGAACGACAAAGTCAACGTATTAACCAAATTATTCAACAAACCTTAGATATGG
CAAAAAATAAAAAAACCATAATGTCCGATATTCAACTTAACATTTTTTTTAAAGATTTATTCATCAATGACTTAGCAGAT
GTAAAAAATCAAATTGCGTTAAGCCTGCCGCAAAATTATATGATTCAGTTTGATGAATCACAGTTAAGACAAGTTTTGAT
TAACCTCGTTCGTAATGCGATACGACATAATGCCCATGATGCTGATTTTATCCAAATTCTAGTACATGCTGAGGCTCAAC
ATCTGTATATTGATGTGATAGACTTCGGTGAAGGGATTGCAAGACAGAATCTTGCACAATTGTTTCAACCCTTTTTTACG
ACTGAAATCAATGGCACAGGACTTGGCTTATACTTATCGCAGAGTATTTGTGAAGCAAACCAAGCCAAGTTGATGTATAT
AGAGCAAAAACAAAAAGGGGCATGTTTTCGAATAGAGTGCCCATTGAAAATTTAA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-287)

His Kinase A (phospho-acceptor) domain (HisKA)

(315-376)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.731

99.237

0.563

Multiple sequence alignment