Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   G3M63_RS19300 Genome accession   NZ_CP048629
Coordinates   4200853..4202427 (+) Length   524 a.a.
NCBI ID   WP_150299558.1    Uniprot ID   A0A6C0TVP0
Organism   Pseudomonas sp. OIL-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4195853..4207427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M63_RS19280 (G3M63_19280) pgeF 4197467..4198192 (-) 726 WP_163984127.1 peptidoglycan editing factor PgeF -
  G3M63_RS19285 (G3M63_19285) rluD 4198193..4199152 (-) 960 WP_163984128.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  G3M63_RS19290 (G3M63_19290) - 4199350..4200345 (+) 996 WP_150299560.1 outer membrane protein assembly factor BamD -
  G3M63_RS19295 (G3M63_19295) - 4200565..4200801 (+) 237 WP_163984129.1 PP0621 family protein -
  G3M63_RS19300 (G3M63_19300) pilS 4200853..4202427 (+) 1575 WP_150299558.1 PAS domain-containing sensor histidine kinase Regulator
  G3M63_RS19305 (G3M63_19305) pilR 4202480..4203826 (+) 1347 WP_150299557.1 sigma-54 dependent transcriptional regulator Regulator
  G3M63_RS19310 (G3M63_19310) thiO 4203830..4204933 (-) 1104 WP_150299556.1 glycine oxidase ThiO -
  G3M63_RS19315 (G3M63_19315) mqo 4205135..4206637 (+) 1503 WP_150299555.1 malate dehydrogenase (quinone) -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 59288.37 Da        Isoelectric Point: 6.3749

>NTDB_id=421983 G3M63_RS19300 WP_150299558.1 4200853..4202427(+) (pilS) [Pseudomonas sp. OIL-1]
MMPESQRPWILRIYNIYRVILGFCLAILTNAALRDGLLDLDNPSLYETASWVYLFVNVLIALMLHEGRRERYLFVLAVLD
IFMLGILFYAAGGVSSGFGNLLIIPVATGNILLHGRIGLLLASLASLVVIYLTFFLSLSHPAASQSYLQVGVLGCIFFAV
ALFVQRLSRQLQQSESLAQQQAVSLASLEKLNQLIIQRMRTGIIVVGPQQKVLQANEASAQMLGKPIIREMELEQLAPDL
AQRLQQWRNYPSIRTLPFRNHRGGVEIMANFKPLAQESDETVLVFLDDNTQVAQQAQQLKLASLGRLTASIAHEIRNPLG
AISHAAQLLRESSQVNEQDQRLSDIIQQHSKRMNKVIETVLELSRRRPSEPQLVDLRLWTEQFIEDFKHVTLATDTVEFE
AEEQELLTRIDPNQLNQVLNNLCQNALRYSGTAGSQRTIWLKLYQNRDTELPVLEVLDHGPGIDDEHVQHVFEPFYTTEA
SGTGLGLYISRELCESNQARLEYERLEPRGSCMRITFAHPKRLI

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=421983 G3M63_RS19300 WP_150299558.1 4200853..4202427(+) (pilS) [Pseudomonas sp. OIL-1]
ATGATGCCTGAGTCGCAACGGCCCTGGATCCTGCGGATCTATAACATCTACCGCGTGATCCTGGGCTTCTGCCTGGCGAT
TCTCACCAACGCCGCGCTTCGTGACGGCCTGCTCGATCTGGACAACCCGAGCCTCTACGAAACTGCCAGCTGGGTCTATC
TGTTCGTCAACGTGCTGATTGCCTTGATGCTGCACGAAGGCCGCCGCGAGAGGTATCTTTTCGTACTGGCGGTCCTCGAC
ATCTTCATGCTCGGCATTCTGTTCTACGCAGCAGGCGGGGTAAGTAGCGGTTTTGGCAACCTGCTGATCATCCCGGTGGC
CACCGGCAATATTCTCCTGCACGGCCGAATCGGCTTGTTGCTCGCCTCCCTCGCCAGCCTGGTGGTGATCTACCTTACGT
TTTTCCTCAGCCTGTCGCATCCGGCTGCCAGTCAGAGTTATCTGCAGGTCGGGGTTCTGGGCTGCATCTTTTTTGCCGTG
GCGCTGTTTGTGCAGCGGCTCAGCCGCCAGCTGCAGCAATCGGAATCGTTGGCCCAGCAACAGGCCGTCAGTCTCGCCTC
GCTGGAAAAACTCAATCAGTTGATCATTCAGCGCATGCGCACCGGCATCATCGTGGTCGGTCCGCAGCAGAAGGTTCTCC
AGGCCAACGAAGCGTCGGCGCAGATGCTTGGCAAACCCATCATCCGCGAAATGGAGCTGGAACAGCTGGCGCCTGACCTG
GCGCAGCGGCTTCAGCAATGGCGCAATTACCCTTCGATTCGCACCCTGCCTTTTCGCAACCATCGCGGCGGTGTGGAAAT
CATGGCCAACTTCAAACCGCTGGCTCAGGAAAGTGACGAAACCGTGCTGGTTTTCCTGGATGACAACACTCAGGTCGCCC
AACAAGCCCAGCAGCTCAAACTGGCCTCCCTGGGACGCCTTACCGCCAGCATCGCCCATGAAATACGCAACCCGCTGGGC
GCGATCAGCCACGCCGCGCAGTTGCTGCGCGAGTCAAGCCAGGTCAACGAGCAGGACCAGCGGCTGAGCGACATCATTCA
GCAGCATTCCAAGCGCATGAACAAAGTCATCGAAACGGTGCTCGAGTTATCCCGCCGTCGCCCCAGCGAACCCCAGCTGG
TGGACCTGCGACTCTGGACCGAGCAATTCATTGAGGATTTCAAGCACGTCACGCTGGCGACTGATACGGTGGAGTTCGAA
GCAGAGGAGCAAGAGCTACTGACCCGTATCGATCCCAACCAGCTCAACCAGGTGTTGAACAACCTCTGCCAGAACGCCCT
GCGCTACAGCGGCACCGCAGGGAGCCAGCGCACCATCTGGCTCAAGCTGTATCAAAACCGCGACACCGAGCTGCCGGTGC
TTGAGGTTCTGGATCACGGACCAGGAATCGATGACGAGCATGTACAGCACGTATTCGAACCTTTCTACACTACGGAAGCA
TCGGGCACCGGTCTGGGGCTGTATATCTCGCGTGAACTCTGTGAGAGCAACCAGGCCAGACTGGAATATGAACGACTCGA
GCCACGGGGAAGTTGTATGCGCATCACCTTCGCACATCCAAAACGGCTGATATGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(303-366)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(411-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C0TVP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

50.192

99.618

0.5

Multiple sequence alignment