Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   G3M63_RS16135 Genome accession   NZ_CP048629
Coordinates   3476702..3477376 (-) Length   224 a.a.
NCBI ID   WP_150298950.1    Uniprot ID   A0A6C0TYM1
Organism   Pseudomonas sp. OIL-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3471702..3482376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M63_RS16105 (G3M63_16105) murB 3472776..3473816 (-) 1041 WP_371923590.1 UDP-N-acetylmuramate dehydrogenase -
  G3M63_RS16110 (G3M63_16110) - 3473816..3474298 (-) 483 WP_163983777.1 low molecular weight protein-tyrosine-phosphatase -
  G3M63_RS16115 (G3M63_16115) kdsB 3474298..3475056 (-) 759 WP_371923472.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  G3M63_RS16120 (G3M63_16120) - 3475058..3475243 (-) 186 WP_150298948.1 Trm112 family protein -
  G3M63_RS16125 (G3M63_16125) lpxK 3475264..3476262 (-) 999 WP_163984310.1 tetraacyldisaccharide 4'-kinase -
  G3M63_RS16130 (G3M63_16130) - 3476268..3476699 (-) 432 WP_150298949.1 biopolymer transporter ExbD -
  G3M63_RS16135 (G3M63_16135) exbB 3476702..3477376 (-) 675 WP_150298950.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  G3M63_RS16140 (G3M63_16140) - 3477457..3479709 (-) 2253 WP_163983778.1 DNA internalization-related competence protein ComEC/Rec2 -
  G3M63_RS16145 (G3M63_16145) - 3479809..3480333 (+) 525 WP_150298952.1 DUF2062 domain-containing protein -
  G3M63_RS16150 (G3M63_16150) lolD 3480661..3481347 (-) 687 WP_150298953.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23833.01 Da        Isoelectric Point: 9.7204

>NTDB_id=421978 G3M63_RS16135 WP_150298950.1 3476702..3477376(-) (exbB) [Pseudomonas sp. OIL-1]
MWELISAGGWLMLPILVSSVIAVAIVIERLWTLRSSKVAPPSLLGQVWRWVKEGQLDSVKLKTLRADSPLGEVLAAGLAN
SRHGREIMKESIQESAGKVIHEMERYLSTLGTIAAITPLLGLLGTVVGMIDVFSAIMAQGTGNTGVLAGGISKALMTTAA
GLTVAIPALFFHRFLMRRIDELVIAMEQEATKLVEVIQGNRDVDASAAAQDGAPLRPGSVRKGA

Nucleotide


Download         Length: 675 bp        

>NTDB_id=421978 G3M63_RS16135 WP_150298950.1 3476702..3477376(-) (exbB) [Pseudomonas sp. OIL-1]
GTGTGGGAATTGATCAGTGCGGGTGGTTGGCTAATGTTGCCAATTCTGGTGTCATCGGTAATTGCCGTCGCCATTGTAAT
AGAGCGACTGTGGACGCTGCGCAGCAGCAAGGTCGCACCGCCAAGCCTGCTCGGGCAGGTCTGGCGCTGGGTCAAGGAAG
GCCAGCTGGATTCGGTAAAACTGAAGACACTCCGTGCCGACTCACCCCTGGGCGAGGTCCTCGCTGCGGGCCTGGCCAAC
TCCCGTCATGGCCGGGAGATCATGAAGGAAAGCATCCAGGAATCGGCCGGCAAGGTGATTCACGAGATGGAGCGCTACCT
CAGCACGCTTGGCACCATCGCAGCCATTACGCCCTTGCTGGGTCTGCTTGGCACGGTAGTCGGCATGATCGATGTGTTCA
GCGCGATCATGGCGCAGGGTACCGGTAATACGGGTGTGCTCGCCGGGGGCATCTCCAAGGCGTTGATGACCACCGCGGCG
GGCCTCACCGTAGCAATTCCGGCCCTGTTCTTTCATCGATTTCTGATGCGCCGCATCGATGAATTGGTGATTGCCATGGA
GCAGGAAGCCACCAAACTGGTTGAAGTCATCCAGGGTAATCGTGATGTCGATGCGTCGGCGGCCGCCCAGGATGGCGCTC
CGTTGCGTCCCGGCAGCGTTCGCAAGGGAGCCTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C0TYM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

70.588

91.071

0.643

Multiple sequence alignment