Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3T12_RS00050 Genome accession   NZ_CP048623
Coordinates   10925..11515 (+) Length   196 a.a.
NCBI ID   WP_005709832.1    Uniprot ID   A0A0J6XXP0
Organism   Lacticaseibacillus rhamnosus strain WHH1155     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5925..16515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T12_RS00030 (G3T12_00030) gyrA 6541..9153 (+) 2613 WP_047677014.1 DNA gyrase subunit A -
  G3T12_RS00035 (G3T12_00035) deoC 9227..9931 (-) 705 WP_047677015.1 deoxyribose-phosphate aldolase -
  G3T12_RS00040 (G3T12_00040) ssb 10041..10472 (+) 432 WP_047677016.1 single-stranded DNA-binding protein -
  G3T12_RS00045 (G3T12_00045) rpsF 10599..10895 (+) 297 WP_005685677.1 30S ribosomal protein S6 -
  G3T12_RS00050 (G3T12_00050) ssb 10925..11515 (+) 591 WP_005709832.1 single-stranded DNA-binding protein Machinery gene
  G3T12_RS00055 (G3T12_00055) rpsR 11606..11842 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  G3T12_RS00060 (G3T12_00065) - 12250..12756 (-) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  G3T12_RS00065 (G3T12_00070) - 13067..14545 (+) 1479 WP_029606625.1 cytochrome ubiquinol oxidase subunit I -
  G3T12_RS00070 (G3T12_00075) cydB 14538..15557 (+) 1020 WP_047677019.1 cytochrome d ubiquinol oxidase subunit II -
  G3T12_RS00075 (G3T12_00080) - 15597..15791 (+) 195 WP_005685667.1 hypothetical protein -
  G3T12_RS00080 - 15870..16127 (-) 258 WP_225350951.1 hypothetical protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20932.66 Da        Isoelectric Point: 4.9056

>NTDB_id=421896 G3T12_RS00050 WP_005709832.1 10925..11515(+) (ssb) [Lacticaseibacillus rhamnosus strain WHH1155]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=421896 G3T12_RS00050 WP_005709832.1 10925..11515(+) (ssb) [Lacticaseibacillus rhamnosus strain WHH1155]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTTACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTCGTCGTTGAAAACTTTGCGTTACTGGAATCGCGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGATATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6XXP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

100

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.749

100

0.505

Multiple sequence alignment