Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | G3M67_RS04405 | Genome accession | NZ_CP048601 |
| Coordinates | 932597..933172 (-) | Length | 191 a.a. |
| NCBI ID | WP_163524796.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain GCT 27 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 927597..938172
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3M67_RS08185 | - | 929318..929860 (-) | 543 | WP_338325486.1 | restriction endonuclease subunit S | - |
| G3M67_RS08190 | - | 929887..930528 (-) | 642 | WP_338325487.1 | restriction endonuclease subunit S | - |
| G3M67_RS04400 (G3M67_04400) | - | 930525..932564 (-) | 2040 | WP_163524794.1 | N-6 DNA methylase | - |
| G3M67_RS04405 (G3M67_04405) | comFC | 932597..933172 (-) | 576 | WP_163524796.1 | ComF family protein | Machinery gene |
| G3M67_RS04410 (G3M67_04410) | tmk | 933160..933735 (-) | 576 | WP_163524798.1 | dTMP kinase | - |
| G3M67_RS04415 (G3M67_04415) | coaD | 933737..934210 (-) | 474 | WP_163524799.1 | pantetheine-phosphate adenylyltransferase | - |
| G3M67_RS04420 (G3M67_04420) | - | 934210..934773 (-) | 564 | WP_131140818.1 | UbiX family flavin prenyltransferase | - |
| G3M67_RS04425 (G3M67_04425) | flgA | 934783..935439 (-) | 657 | WP_097713959.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| G3M67_RS04430 (G3M67_04430) | uvrD | 935436..937481 (-) | 2046 | WP_205424813.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21295.83 Da Isoelectric Point: 8.6728
>NTDB_id=421712 G3M67_RS04405 WP_163524796.1 932597..933172(-) (comFC) [Helicobacter pylori strain GCT 27]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAISYAGKSLEFRANNLRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAISYAGKSLEFRANNLRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=421712 G3M67_RS04405 WP_163524796.1 932597..933172(-) (comFC) [Helicobacter pylori strain GCT 27]
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGACTTTAAGGGCGACTAACGCTATTTCATATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCTACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTCTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGACTTTAAGGGCGACTAACGCTATTTCATATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCTACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTCTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |