Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | G3M67_RS03165 | Genome accession | NZ_CP048601 |
| Coordinates | 671106..671510 (+) | Length | 134 a.a. |
| NCBI ID | WP_163524544.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain GCT 27 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 666106..676510
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3M67_RS03130 (G3M67_03130) | - | 666284..667222 (-) | 939 | WP_163524538.1 | tetraacyldisaccharide 4'-kinase | - |
| G3M67_RS03135 (G3M67_03135) | - | 667219..668001 (-) | 783 | WP_163524539.1 | NAD+ synthase | - |
| G3M67_RS03145 (G3M67_03145) | ilvC | 668250..669242 (+) | 993 | WP_163524541.1 | ketol-acid reductoisomerase | - |
| G3M67_RS03150 (G3M67_03150) | minD | 669266..670072 (+) | 807 | WP_001019055.1 | septum site-determining protein MinD | - |
| G3M67_RS03155 (G3M67_03155) | minE | 670069..670302 (+) | 234 | WP_000051414.1 | cell division topological specificity factor MinE | - |
| G3M67_RS03160 (G3M67_03160) | dprA | 670309..671109 (+) | 801 | WP_163524542.1 | DNA-processing protein DprA | Machinery gene |
| G3M67_RS03165 (G3M67_03165) | dprB | 671106..671510 (+) | 405 | WP_163524544.1 | Holliday junction resolvase RuvX | Machinery gene |
| G3M67_RS03170 (G3M67_03170) | - | 671797..672341 (+) | 545 | Protein_643 | tetratricopeptide repeat protein | - |
| G3M67_RS03175 (G3M67_03175) | - | 672469..672807 (+) | 339 | WP_021176524.1 | hypothetical protein | - |
| G3M67_RS03180 (G3M67_03180) | - | 672791..673351 (+) | 561 | WP_163524546.1 | hypothetical protein | - |
| G3M67_RS03185 (G3M67_03185) | - | 673596..674477 (-) | 882 | WP_163524548.1 | RluA family pseudouridine synthase | - |
| G3M67_RS03190 (G3M67_03190) | recJ | 674477..676027 (-) | 1551 | WP_163524550.1 | single-stranded-DNA-specific exonuclease RecJ | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 15236.68 Da Isoelectric Point: 8.2822
>NTDB_id=421711 G3M67_RS03165 WP_163524544.1 671106..671510(+) (dprB) [Helicobacter pylori strain GCT 27]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADMNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKRLATKDGRLDSLSACRILERYCQQVLKNH
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADMNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKRLATKDGRLDSLSACRILERYCQQVLKNH
Nucleotide
Download Length: 405 bp
>NTDB_id=421711 G3M67_RS03165 WP_163524544.1 671106..671510(+) (dprB) [Helicobacter pylori strain GCT 27]
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGAATCGCTGTGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTACGCCATAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGAGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCAGATATGAACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTGGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGAATCGCTGTGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTACGCCATAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGAGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCAGATATGAACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTGGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
95.522 |
100 |
0.955 |