Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   G3M67_RS01035 Genome accession   NZ_CP048601
Coordinates   221698..221979 (-) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 27     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 216698..226979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M67_RS01015 (G3M67_01015) - 217425..218765 (-) 1341 WP_001938079.1 COG3014 family protein -
  G3M67_RS01025 (G3M67_01025) comB4 219070..221433 (-) 2364 WP_163524303.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  G3M67_RS01030 (G3M67_01030) comB3 221435..221698 (-) 264 WP_000584973.1 hypothetical protein Machinery gene
  G3M67_RS01035 (G3M67_01035) comB2 221698..221979 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  G3M67_RS01040 (G3M67_01040) - 222125..222952 (-) 828 WP_001154904.1 DUF5718 family protein -
  G3M67_RS01045 (G3M67_01045) - 223045..224097 (-) 1053 WP_163524304.1 MnmA/TRMU family protein -
  G3M67_RS01050 (G3M67_01050) dnaG 224094..225773 (-) 1680 WP_163524305.1 DNA primase -
  G3M67_RS01055 (G3M67_01055) groES 226061..226417 (+) 357 WP_000671951.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=421705 G3M67_RS01035 WP_001272690.1 221698..221979(-) (comB2) [Helicobacter pylori strain GCT 27]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=421705 G3M67_RS01035 WP_001272690.1 221698..221979(-) (comB2) [Helicobacter pylori strain GCT 27]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATCTTTTTATTCTTT
AAGGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment