Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | G3M67_RS01030 | Genome accession | NZ_CP048601 |
| Coordinates | 221435..221698 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584973.1 | Uniprot ID | G2MDJ4 |
| Organism | Helicobacter pylori strain GCT 27 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 216435..226698
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3M67_RS01015 (G3M67_01015) | - | 217425..218765 (-) | 1341 | WP_001938079.1 | COG3014 family protein | - |
| G3M67_RS01025 (G3M67_01025) | comB4 | 219070..221433 (-) | 2364 | WP_163524303.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| G3M67_RS01030 (G3M67_01030) | comB3 | 221435..221698 (-) | 264 | WP_000584973.1 | hypothetical protein | Machinery gene |
| G3M67_RS01035 (G3M67_01035) | comB2 | 221698..221979 (-) | 282 | WP_001272690.1 | TrbC/VirB2 family protein | Machinery gene |
| G3M67_RS01040 (G3M67_01040) | - | 222125..222952 (-) | 828 | WP_001154904.1 | DUF5718 family protein | - |
| G3M67_RS01045 (G3M67_01045) | - | 223045..224097 (-) | 1053 | WP_163524304.1 | MnmA/TRMU family protein | - |
| G3M67_RS01050 (G3M67_01050) | dnaG | 224094..225773 (-) | 1680 | WP_163524305.1 | DNA primase | - |
| G3M67_RS01055 (G3M67_01055) | groES | 226061..226417 (+) | 357 | WP_000671951.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10034.13 Da Isoelectric Point: 9.5290
>NTDB_id=421704 G3M67_RS01030 WP_000584973.1 221435..221698(-) (comB3) [Helicobacter pylori strain GCT 27]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=421704 G3M67_RS01030 WP_000584973.1 221435..221698(-) (comB3) [Helicobacter pylori strain GCT 27]
ATGATTATCTTATCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCTTATCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
98.851 |
100 |
0.989 |