Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | G3M68_RS01125 | Genome accession | NZ_CP048600 |
| Coordinates | 238790..239365 (-) | Length | 191 a.a. |
| NCBI ID | WP_163497690.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain GCT 43 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 233790..244365
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3M68_RS07895 | - | 235491..236719 (-) | 1229 | Protein_224 | restriction endonuclease subunit S | - |
| G3M68_RS01120 (G3M68_01120) | - | 236716..238755 (-) | 2040 | WP_163497689.1 | N-6 DNA methylase | - |
| G3M68_RS01125 (G3M68_01125) | comFC | 238790..239365 (-) | 576 | WP_163497690.1 | ComF family protein | Machinery gene |
| G3M68_RS01130 (G3M68_01130) | tmk | 239353..239928 (-) | 576 | WP_163497691.1 | dTMP kinase | - |
| G3M68_RS01135 (G3M68_01135) | coaD | 239932..240405 (-) | 474 | WP_024118156.1 | pantetheine-phosphate adenylyltransferase | - |
| G3M68_RS01140 (G3M68_01140) | - | 240405..240968 (-) | 564 | WP_000780095.1 | UbiX family flavin prenyltransferase | - |
| G3M68_RS01145 (G3M68_01145) | flgA | 240978..241634 (-) | 657 | WP_163497692.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| G3M68_RS01150 (G3M68_01150) | uvrD | 241631..243676 (-) | 2046 | WP_205428031.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21456.25 Da Isoelectric Point: 9.4392
>NTDB_id=421679 G3M68_RS01125 WP_163497690.1 238790..239365(-) (comFC) [Helicobacter pylori strain GCT 43]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAMNTIKYAGKSLEFRTNHPRDFTFKGDKNLDYFLLDDII
TTGTTIKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAMNTIKYAGKSLEFRTNHPRDFTFKGDKNLDYFLLDDII
TTGTTIKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=421679 G3M68_RS01125 WP_163497690.1 238790..239365(-) (comFC) [Helicobacter pylori strain GCT 43]
ATGCGCTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCGGGGGCAGAGTTTGTGAAAATCCTACAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAACCCACTTACGGGCGTTTAAGGGCCATGAATACTATCAAATATGCCGGGAAAAGCCTAG
AATTTCGCACTAACCACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCATAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA
ATGCGCTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCGGGGGCAGAGTTTGTGAAAATCCTACAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAACCCACTTACGGGCGTTTAAGGGCCATGAATACTATCAAATATGCCGGGAAAAGCCTAG
AATTTCGCACTAACCACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCATAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.194 |
100 |
0.932 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |