Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | G3M69_RS04460 | Genome accession | NZ_CP048599 |
| Coordinates | 918619..919194 (-) | Length | 191 a.a. |
| NCBI ID | WP_163563095.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain GCT 97 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 913619..924194
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3M69_RS08050 | - | 915315..915851 (-) | 537 | WP_240329088.1 | restriction endonuclease subunit S | - |
| G3M69_RS08055 | - | 915887..916555 (-) | 669 | WP_240329089.1 | restriction endonuclease subunit S | - |
| G3M69_RS04455 (G3M69_04455) | - | 916552..918588 (-) | 2037 | WP_163563094.1 | N-6 DNA methylase | - |
| G3M69_RS04460 (G3M69_04460) | comFC | 918619..919194 (-) | 576 | WP_163563095.1 | ComF family protein | Machinery gene |
| G3M69_RS04465 (G3M69_04465) | tmk | 919182..919757 (-) | 576 | WP_163563096.1 | dTMP kinase | - |
| G3M69_RS04470 (G3M69_04470) | coaD | 919759..920232 (-) | 474 | WP_042636077.1 | pantetheine-phosphate adenylyltransferase | - |
| G3M69_RS04475 (G3M69_04475) | - | 920232..920795 (-) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| G3M69_RS04480 (G3M69_04480) | flgA | 920805..921461 (-) | 657 | WP_163563097.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| G3M69_RS04485 (G3M69_04485) | uvrD | 921458..923503 (-) | 2046 | WP_205424837.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21339.98 Da Isoelectric Point: 9.0983
>NTDB_id=421671 G3M69_RS04460 WP_163563095.1 918619..919194(-) (comFC) [Helicobacter pylori strain GCT 97]
MRCLTCLKLSFRPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGVEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANHPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFRPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGVEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANHPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=421671 G3M69_RS04460 WP_163563095.1 918619..919194(-) (comFC) [Helicobacter pylori strain GCT 97]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAGGCCTCTTTGCCCCAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCGGGCGTGGAGTTTGTGAAAATCCTACAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAGGG
CTTTTGTCAAGGGAATTTAAAACCCACTTATGGGACTTTAAGAGCGACTAATGCCGTTTCGTATGCTGGGAAAAGCCTGG
AATTTCGCGCTAACCACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAGGCCTCTTTGCCCCAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCGGGCGTGGAGTTTGTGAAAATCCTACAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAGGG
CTTTTGTCAAGGGAATTTAAAACCCACTTATGGGACTTTAAGAGCGACTAATGCCGTTTCGTATGCTGGGAAAAGCCTGG
AATTTCGCGCTAACCACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.717 |
100 |
0.937 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |