Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   G3M69_RS01640 Genome accession   NZ_CP048599
Coordinates   344053..344457 (+) Length   134 a.a.
NCBI ID   WP_163562830.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 97     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 339053..349457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M69_RS01605 (G3M69_01605) - 339231..340169 (-) 939 WP_163562827.1 tetraacyldisaccharide 4'-kinase -
  G3M69_RS01610 (G3M69_01610) - 340166..340948 (-) 783 WP_163562828.1 NAD+ synthase -
  G3M69_RS01620 (G3M69_01620) ilvC 341197..342189 (+) 993 WP_163562829.1 ketol-acid reductoisomerase -
  G3M69_RS01625 (G3M69_01625) minD 342213..343019 (+) 807 WP_001019048.1 septum site-determining protein MinD -
  G3M69_RS01630 (G3M69_01630) minE 343016..343249 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  G3M69_RS01635 (G3M69_01635) dprA 343256..344056 (+) 801 WP_000835215.1 DNA-processing protein DprA Machinery gene
  G3M69_RS01640 (G3M69_01640) dprB 344053..344457 (+) 405 WP_163562830.1 Holliday junction resolvase RuvX Machinery gene
  G3M69_RS01645 (G3M69_01645) - 344743..344993 (+) 251 Protein_326 sel1 repeat family protein -
  G3M69_RS01650 (G3M69_01650) - 345179..345517 (+) 339 WP_000699883.1 hypothetical protein -
  G3M69_RS01655 (G3M69_01655) - 345501..346061 (+) 561 WP_163562831.1 hypothetical protein -
  G3M69_RS01660 (G3M69_01660) - 346164..347045 (-) 882 WP_163562832.1 RluA family pseudouridine synthase -
  G3M69_RS01665 (G3M69_01665) recJ 347045..348595 (-) 1551 WP_163562833.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15207.78 Da        Isoelectric Point: 9.2200

>NTDB_id=421667 G3M69_RS01640 WP_163562830.1 344053..344457(+) (dprB) [Helicobacter pylori strain GCT 97]
MILACDVGLKRIGIAALLNGVILPLEAILRRNRNQASRDLSDLLREKNIQVLVVGKPNESYADMNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKRLATKDGRLDSLSACRILECYCQKVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=421667 G3M69_RS01640 WP_163562830.1 344053..344457(+) (dprB) [Helicobacter pylori strain GCT 97]
ATGATTTTAGCATGCGATGTGGGGCTAAAACGCATTGGCATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCGCAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGAGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCAGATATGAACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGATAATTCCAGTATAGAAGCTTATGAAAATTTGGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGTGCTATTGCCAGAAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94

Multiple sequence alignment