Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ECO55CA74_RS16175 Genome accession   NC_017656
Coordinates   3207554..3208291 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O55:H7 str. RM12579     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3202554..3213291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO55CA74_RS16160 (ECO55CA74_15440) clpC 3203008..3205581 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ECO55CA74_RS16165 (ECO55CA74_15445) yfiH 3205711..3206442 (-) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  ECO55CA74_RS16170 (ECO55CA74_15450) rluD 3206439..3207419 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ECO55CA74_RS16175 (ECO55CA74_15455) comL 3207554..3208291 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ECO55CA74_RS16185 (ECO55CA74_15460) raiA 3208562..3208903 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ECO55CA74_RS31160 pheL 3209007..3209054 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ECO55CA74_RS16190 (ECO55CA74_15465) pheA 3209153..3210313 (+) 1161 WP_000200089.1 bifunctional chorismate mutase/prephenate dehydratase -
  ECO55CA74_RS16195 (ECO55CA74_15470) tyrA 3210356..3211477 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ECO55CA74_RS16200 (ECO55CA74_15475) aroF 3211488..3212558 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ECO55CA74_RS16205 (ECO55CA74_15480) yfiL 3212768..3213133 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=42138 ECO55CA74_RS16175 WP_000197686.1 3207554..3208291(+) (comL) [Escherichia coli O55:H7 str. RM12579]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=42138 ECO55CA74_RS16175 WP_000197686.1 3207554..3208291(+) (comL) [Escherichia coli O55:H7 str. RM12579]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment