Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   GZ067_RS07120 Genome accession   NZ_CP048431
Coordinates   1437970..1438539 (-) Length   189 a.a.
NCBI ID   WP_000872874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA1428     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1432970..1443539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ067_RS07080 (GZ067_07085) - 1433443..1434051 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  GZ067_RS07085 (GZ067_07090) rplL 1434226..1434594 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  GZ067_RS07090 (GZ067_07095) rplJ 1434637..1435137 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  GZ067_RS07095 (GZ067_07100) rplA 1435410..1436102 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  GZ067_RS07100 (GZ067_07105) rplK 1436310..1436732 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  GZ067_RS07105 (GZ067_07110) nusG 1436913..1437461 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  GZ067_RS07110 (GZ067_07115) secE 1437474..1437656 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  GZ067_RS07115 (GZ067_07120) rpmG 1437712..1437855 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  GZ067_RS07120 (GZ067_07125) sigH 1437970..1438539 (-) 570 WP_000872874.1 RNA polymerase sigma factor Regulator
  GZ067_RS07125 (GZ067_07130) - 1438620..1439144 (-) 525 WP_000664738.1 NYN domain-containing protein -
  GZ067_RS07130 (GZ067_07135) rlmB 1439144..1439890 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GZ067_RS07135 (GZ067_07140) - 1439898..1440302 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  GZ067_RS07140 (GZ067_07145) cysS 1440295..1441695 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  GZ067_RS07145 (GZ067_07150) cysE 1441679..1442326 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=421306 GZ067_RS07120 WP_000872874.1 1437970..1438539(-) (sigH) [Staphylococcus aureus strain SA1428]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=421306 GZ067_RS07120 WP_000872874.1 1437970..1438539(-) (sigH) [Staphylococcus aureus strain SA1428]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment