Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GZ067_RS05175 Genome accession   NZ_CP048431
Coordinates   1044419..1045405 (-) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA1428     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1039419..1050405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ067_RS05150 (GZ067_05155) - 1039679..1040026 (-) 348 WP_001242102.1 hypothetical protein -
  GZ067_RS05155 (GZ067_05160) - 1040212..1040805 (+) 594 WP_000224612.1 CYTH domain-containing protein -
  GZ067_RS05160 (GZ067_05165) - 1040909..1041274 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  GZ067_RS05165 (GZ067_05170) yjbH 1041297..1042103 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  GZ067_RS05170 (GZ067_05175) pepF 1042563..1044371 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  GZ067_RS05175 (GZ067_05180) coiA 1044419..1045405 (-) 987 WP_000959292.1 competence protein CoiA family protein Machinery gene
  GZ067_RS05180 (GZ067_05185) mecA 1045526..1046245 (-) 720 WP_164025974.1 adaptor protein MecA -
  GZ067_RS05185 (GZ067_05190) spxA 1046616..1047011 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  GZ067_RS05190 (GZ067_05195) trpS 1047306..1048295 (+) 990 WP_000448943.1 tryptophan--tRNA ligase -
  GZ067_RS05195 (GZ067_05200) opp4C 1048337..1049218 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  GZ067_RS05200 (GZ067_05205) opp4B 1049230..1050192 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=421301 GZ067_RS05175 WP_000959292.1 1044419..1045405(-) (coiA) [Staphylococcus aureus strain SA1428]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=421301 GZ067_RS05175 WP_000959292.1 1044419..1045405(-) (coiA) [Staphylococcus aureus strain SA1428]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment