Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GYM54_RS15880 Genome accession   NZ_CP048411
Coordinates   3437439..3437846 (+) Length   135 a.a.
NCBI ID   WP_131649528.1    Uniprot ID   -
Organism   Pseudomonas sp. MTM4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3432439..3442846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM54_RS15850 (GYM54_15840) - 3432506..3433522 (-) 1017 WP_181099536.1 aspartate carbamoyltransferase catalytic subunit -
  GYM54_RS15855 (GYM54_15845) pyrR 3433531..3434043 (-) 513 WP_181099538.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  GYM54_RS15860 (GYM54_15850) ruvX 3434064..3434492 (-) 429 WP_197444893.1 Holliday junction resolvase RuvX -
  GYM54_RS15865 (GYM54_15855) - 3434489..3435058 (-) 570 WP_131649525.1 YqgE/AlgH family protein -
  GYM54_RS15870 (GYM54_15860) - 3435194..3436093 (-) 900 WP_181099540.1 energy transducer TonB -
  GYM54_RS15875 (GYM54_15865) gshB 3436253..3437203 (-) 951 WP_181099542.1 glutathione synthase -
  GYM54_RS15880 (GYM54_15870) pilG 3437439..3437846 (+) 408 WP_131649528.1 twitching motility response regulator PilG Regulator
  GYM54_RS15885 (GYM54_15875) pilH 3437890..3438255 (+) 366 WP_021206021.1 twitching motility response regulator PilH -
  GYM54_RS15890 (GYM54_15880) - 3438294..3438830 (+) 537 WP_131649529.1 chemotaxis protein CheW -
  GYM54_RS15895 (GYM54_15885) - 3438910..3440958 (+) 2049 WP_131649530.1 methyl-accepting chemotaxis protein -
  GYM54_RS15900 (GYM54_15890) - 3441018..3441884 (+) 867 WP_131649531.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14873.32 Da        Isoelectric Point: 7.8535

>NTDB_id=421165 GYM54_RS15880 WP_131649528.1 3437439..3437846(+) (pilG) [Pseudomonas sp. MTM4]
MEQHSEGLKVMVIDDSKTIRRTAETLLKKVGCDVITAVDGFDALAKIADSRPRIIFVDIMMPRLDGYQTCALIKNNSSFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKAHVPDFAPIEQVS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=421165 GYM54_RS15880 WP_131649528.1 3437439..3437846(+) (pilG) [Pseudomonas sp. MTM4]
ATGGAACAGCACTCCGAGGGCTTGAAGGTCATGGTGATCGACGATTCGAAAACGATTCGTCGCACCGCCGAAACGCTGCT
GAAGAAAGTAGGTTGTGATGTGATCACGGCGGTGGATGGCTTCGATGCGCTCGCCAAGATAGCGGATAGCCGCCCACGCA
TCATTTTCGTCGATATCATGATGCCTCGGCTTGATGGTTATCAGACTTGCGCGCTGATCAAGAACAACAGTTCGTTCAAG
TCCACGCCGGTAATCATGCTGTCTTCCAAGGATGGCCTGTTCGACAAGGCCAAAGGGCGGATTGTGGGGTCGGACCAATA
CCTCACCAAGCCTTTCAGCAAAGAAGAGTTGCTCGGTGCTATCAAGGCTCACGTGCCTGATTTCGCACCGATAGAGCAAG
TATCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

92.593

0.704
  vicR Streptococcus mutans UA159

43.548

91.852

0.4

Multiple sequence alignment