Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   D8K17_RS14210 Genome accession   NZ_CP061322
Coordinates   762710..763705 (+) Length   331 a.a.
NCBI ID   WP_375153009.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis bv. diacetylactis strain S50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 757710..768705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8K17_RS04010 (D8K17_004020) rpsA 758669..759895 (+) 1227 WP_003132594.1 30S ribosomal protein S1 -
  D8K17_RS04015 (D8K17_004025) - 760046..760762 (+) 717 WP_003132595.1 nucleoside phosphorylase -
  D8K17_RS04020 (D8K17_004030) pnuC 760891..761604 (+) 714 WP_003132596.1 nicotinamide riboside transporter PnuC -
  D8K17_RS14205 uvrC 761699..762661 (+) 963 Protein_779 excinuclease ABC subunit UvrC -
  D8K17_RS14210 uvrC 762710..763705 (+) 996 WP_375153009.1 hypothetical protein Machinery gene
  D8K17_RS04030 (D8K17_004040) mutY 763869..765032 (+) 1164 WP_003132598.1 A/G-specific adenine glycosylase -
  D8K17_RS04035 (D8K17_004045) pepV 765098..766516 (+) 1419 WP_003132599.1 dipeptidase PepV -
  D8K17_RS04040 (D8K17_004050) acpS 766619..766978 (+) 360 WP_003132600.1 holo-ACP synthase -
  D8K17_RS04045 (D8K17_004055) alr 767023..768126 (+) 1104 WP_003132601.1 alanine racemase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 37059.80 Da        Isoelectric Point: 10.1078

>NTDB_id=421108 D8K17_RS14210 WP_375153009.1 762710..763705(+) (uvrC) [Lactococcus lactis subsp. lactis bv. diacetylactis strain S50]
MDAKVFTAKTLKFSDQKDVEQSIVKLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDIL
KTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKTVVGADDYASMREVMTRRYSRAL
KEETALPDLIAMDGGAGQVNITKQVLKELGLSIPVAGMQKNDKHQTSELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRF
AITFHRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEADIPYEVAERVKTTLSGPIQENENWESL
KDNVPLLEGKK

Nucleotide


Download         Length: 996 bp        

>NTDB_id=421108 D8K17_RS14210 WP_375153009.1 762710..763705(+) (uvrC) [Lactococcus lactis subsp. lactis bv. diacetylactis strain S50]
GTGGATGCAAAAGTTTTTACGGCCAAGACGCTTAAATTTTCTGATCAAAAAGATGTTGAGCAATCAATTGTTAAACTTGA
TAAAGAATTATCAGCCGAAAAACGTTTATCATCACTTTTAGCTAAAACACAGATTGTTCAACCAAGCCGTGGTGAGAAAA
AACAATTGGTTAATATGGCAACTAAGAATGCTCAAAGTCAATTACAATTGAAATTTGATGTGGCTGAGCGTGATATTTTG
AAAACGACTAAAGCGGTTGAAAACTTGGGTAAAATTTTGGGAATACCAAAACCTGTAAGAATTGAATCTTTTGATAATTC
AAATATTATGGGGACTTCACCAGTATCTGCAATGGTTGTTTTTATTGATGGAAAACCTTCAAAAAAAGATTATCGGAAAT
ATAAAATTAAAACAGTGGTTGGTGCGGATGACTATGCTTCAATGCGCGAGGTGATGACGAGACGTTATTCGCGAGCTTTA
AAAGAAGAAACGGCTCTTCCTGATTTGATTGCAATGGATGGTGGAGCTGGTCAAGTTAACATTACCAAGCAAGTTTTAAA
AGAGCTTGGGCTATCGATTCCGGTTGCTGGGATGCAAAAAAATGATAAGCACCAAACGTCAGAATTACTTTTTGGTGATC
CTTTAGACGTGGTTCCCTTGTCAAGACAATCTCAAGAATTCTTTTTGCTGACCAGAATTCAAGATGAGGTTCACCGTTTT
GCGATTACATTCCATAGACAACTACGTGGTAAAAATACATTTTCAAGTAAATTGGACGGTATTGTTGGACTTGGTCCAAA
ACGAAAACAAAAGTTACTGACAACTTTCAAAAATTTGAAAGCAATTGAAGAGGCAAGTGTACAAGAAGTGGCAGAAGCTG
ACATTCCTTATGAAGTAGCAGAACGTGTGAAAACAACTTTGTCTGGACCAATTCAAGAAAATGAAAATTGGGAATCACTC
AAGGATAATGTTCCTCTTTTAGAAGGTAAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(92-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

70

81.571

0.571
  uvrC Streptococcus pneumoniae D39

70

81.571

0.571
  uvrC Streptococcus pneumoniae TIGR4

70

81.571

0.571