Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GZH81_RS14440 Genome accession   NZ_CP048388
Coordinates   3039598..3040212 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter portucalensis strain PNUCL1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3034598..3045212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH81_RS14425 helD 3034822..3036876 (-) 2055 WP_212023973.1 DNA helicase IV -
  GZH81_RS14430 - 3037002..3037448 (+) 447 WP_003831998.1 YccF domain-containing protein -
  GZH81_RS14435 yccS 3037467..3039620 (+) 2154 WP_195995544.1 YccS family putative transporter -
  GZH81_RS14440 sxy/tfoX 3039598..3040212 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  GZH81_RS14445 sulA 3040430..3040939 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  GZH81_RS14450 ompA 3041297..3042355 (+) 1059 WP_048227017.1 porin OmpA -
  GZH81_RS14455 matP 3042444..3042896 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  GZH81_RS14460 - 3043082..3044842 (+) 1761 WP_111465810.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=420918 GZH81_RS14440 WP_003831996.1 3039598..3040212(-) (sxy/tfoX) [Citrobacter portucalensis strain PNUCL1]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=420918 GZH81_RS14440 WP_003831996.1 3039598..3040212(-) (sxy/tfoX) [Citrobacter portucalensis strain PNUCL1]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCTCTGTGGCAAAACCAGCAGCAGCTGGTGTCGTTATCGCGATATTCATTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACTATGCGGTCGTTAGGAGCACAAATGTGCTGGCTGAAACTTAGGCAAAATAAT
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676

Multiple sequence alignment