Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IB283_RS00090 Genome accession   NZ_CP061185
Coordinates   18268..19677 (-) Length   469 a.a.
NCBI ID   WP_012602497.1    Uniprot ID   -
Organism   Escherichia coli strain LD67-1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 13268..24677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB283_RS00070 (IB283_00070) yihA 14571..15203 (-) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  IB283_RS25795 - 15500..15666 (+) 167 Protein_9 hypothetical protein -
  IB283_RS00075 (IB283_00075) yihI 15785..16294 (+) 510 WP_001572146.1 Der GTPase-activating protein YihI -
  IB283_RS00080 (IB283_00080) hemN 16483..17856 (+) 1374 WP_000116093.1 oxygen-independent coproporphyrinogen III oxidase -
  IB283_RS00085 (IB283_00085) yshB 18046..18156 (-) 111 WP_000893994.1 YshB family small membrane protein -
  IB283_RS00090 (IB283_00090) luxO 18268..19677 (-) 1410 WP_012602497.1 nitrogen regulation protein NR(I) Regulator
  IB283_RS00095 (IB283_00095) glnL 19689..20738 (-) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  IB283_RS00100 (IB283_00100) glnA 20912..22321 (-) 1410 WP_001271717.1 glutamate--ammonia ligase -
  IB283_RS00105 (IB283_00105) typA 22694..24517 (+) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52239.77 Da        Isoelectric Point: 6.4561

>NTDB_id=420735 IB283_RS00090 WP_012602497.1 18268..19677(-) (luxO) [Escherichia coli strain LD67-1]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLELRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=420735 IB283_RS00090 WP_012602497.1 18268..19677(-) (luxO) [Escherichia coli strain LD67-1]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTCGCGCTGGTTGAGCGCGCCATCAGTCATTACCAAGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAATCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
AGCCAAAGCGCCATTTATCGCGCTGAATATGGCGGCTATCCCGAAGGATTTGATCGAATCAGAACTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAAGCCGATGGTGGCACATTATTCCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACCCGTTTGCTGCGCGTACTGGCAGACGGTCAGTTTTACCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGTATTATCGCTGCTACTCACCAGAACCTGGAACTGCGCGTGCAGGAAGGCAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATTTGCCGCCACTGCGTGAGCGTCGGGAAGATATTCCCCGC
CTGGCACGCCATTTTTTACAGGTTGCCGCACGCGAACTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCCGC
GCTGACGCGTCTGGCATGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGTCGCTGGCTAACGGTGATGGCTGCCGGGC
AGGAAGTGTTGATCCAGGATTTGCCTGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGCAAATGCAACCGGAC
AGTTGGGCGACACTTTTAGCGCAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAACCTGCTTTCCGAAGCGCAGCC
TGAGCTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGCCGCAACACCCTGACGCGTAAGTTAAAAGAGCTAGGGATGGAGTGA

Domains

Predicted by InterProScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.871

98.934

0.394
  pilR Pseudomonas aeruginosa PAK

39.066

100

0.392