Detailed information NTG0420640

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: IAU66_RS07175
• Genome accession: NZ_CP061168
• Coordinates: 1395217..1397313 (-)
• Length: 698 a.a.
• NCBI ID: WP_024085227.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain T-5
• Function: repress competence development (at the early growth phase) (predicted from homology) Competence regulation

Genomic Context

Location: 1390217..1402313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IAU66_RS07150	-	1390806..1391066 (+)	261	WP_003154690.1	aspartyl-phosphate phosphatase Spo0E family protein	-
IAU66_RS07155	-	1391277..1392794 (-)	1518	WP_046559543.1	ATP-binding protein	-
IAU66_RS07160	-	1392993..1393439 (+)	447	WP_003154686.1	MarR family winged helix-turn-helix transcriptional regulator	-
IAU66_RS07165	motB	1393475..1394260 (-)	786	WP_003154685.1	flagellar motor protein MotB	-
IAU66_RS07170	motA	1394232..1395047 (-)	816	WP_003154684.1	flagellar motor stator protein MotA	-
IAU66_RS07175	clpE	1395217..1397313 (-)	2097	WP_024085227.1	ATP-dependent protease ATP-binding subunit ClpE	Regulator
IAU66_RS07180	-	1397715..1398752 (+)	1038	WP_003154681.1	membrane protein	-
IAU66_RS07185	-	1398850..1399971 (+)	1122	WP_024085228.1	hypothetical protein	-
IAU66_RS07190	queC	1400221..1400880 (+)	660	WP_003154679.1	7-cyano-7-deazaguanine synthase QueC	-
IAU66_RS07195	queD	1400941..1401321 (+)	381	WP_228841473.1	6-carboxytetrahydropterin synthase QueD	-
IAU66_RS07200	queE	1401314..1402045 (+)	732	WP_014304903.1	7-carboxy-7-deazaguanine synthase QueE	-

Sequence

Protein

• Length: 698 a.a.
• Molecular weight: 77773.74 Da
• Isoelectric Point: 5.1782

>NTDB_id=420640 IAU66_RS07175 WP_024085227.1 1395217..1397313(-) (clpE) [Bacillus amyloliquefaciens strain T-5]
MRCQHCQKNEATIRLNMQVNSIQKQFVLCETCYTELTRKPSMSMGPQSFGFPFEQGFAPNQNKQQAGPEKGLLDELAQNV
TNGAKAGLIDPVIGRDNEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVAN
TGIRGQFEERMKQLMNELKERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAALE
RRFQPVMVHEPTIEQAISILEGIKDKYEKYHGVTFSNEAINACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLELDTVNE
EDAAERLNAIDAEKTKALQEENYELAAKLRDEEAALEKQLAHETPASSPEIGAEHIQAIIEQKTGIPVGKLQADEQVKMK
ELEEHLHQRVIGQEKAVKKVTKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDSIIRLDMSEYMEK
HAVSKIIGSPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVLIMTSNA
GTGEKQVKVGFQSEESVMEEQTLIDSLSAFFKPEFLNRFDSIIEFQSLKKEHLVKIVSLLLTELEDTLKERGISLSVTDD
AKEKIAEIGYHPAFGARPLRRTIQELIEDEMTDLLLDDNEIKAFHVVMEEDGIKVRAQ

Nucleotide

• Length: 2097 bp

>NTDB_id=420640 IAU66_RS07175 WP_024085227.1 1395217..1397313(-) (clpE) [Bacillus amyloliquefaciens strain T-5]
ATGCGTTGTCAACATTGTCAGAAAAACGAGGCGACGATTCGCCTGAACATGCAAGTCAATTCCATTCAAAAACAATTCGT
TTTATGTGAAACATGTTATACAGAATTAACCCGAAAACCGTCTATGAGCATGGGGCCGCAATCATTCGGATTCCCGTTTG
AGCAAGGTTTCGCTCCCAATCAAAATAAACAGCAGGCCGGCCCTGAAAAAGGCCTGCTCGACGAGCTCGCTCAAAACGTC
ACAAACGGCGCAAAAGCAGGTCTGATTGACCCTGTGATCGGCCGCGATAATGAAGTGGCGCGCGTAATTGAAATTTTGAA
CCGCCGGAATAAAAACAATCCGGTGCTGATCGGTGAGCCGGGCGTCGGTAAAACGGCTATTGCAGAAGGCCTCGCGCTTA
AAATCGCTGAAGGCGATGTGCCGAACAAGTTGAAAAACAAAGAGCTTTACCTGCTTGACGTCGCTTCTCTCGTCGCCAAT
ACAGGGATCAGAGGCCAGTTTGAAGAAAGAATGAAACAATTAATGAACGAATTAAAAGAACGGAAAAATGTCATCTTGTT
CATTGATGAGATTCACCTTCTTGTAGGCGCCGGCTCTGCCGAGGGATCAATGGATGCCGGGAACATCCTGAAACCGGCGC
TTGCCAGAGGCGAGCTGCAGGTCATCGGGGCGACAACGCTGAAAGAGTACCGCCAGATTGAAAAAGATGCGGCGCTTGAA
AGACGCTTCCAGCCTGTCATGGTTCACGAGCCTACAATAGAACAAGCCATCAGCATTCTTGAAGGCATTAAAGATAAATA
CGAGAAATACCACGGCGTCACATTCAGCAATGAAGCGATAAACGCCTGTGTTACGCTTTCATCCCGTTACATTCAGGACC
GCCACCTGCCGGATAAAGCGATCGACTTATTAGATGAAGCCGGCTCTAAGGCGAACCTGGAACTTGATACCGTAAATGAA
GAAGATGCGGCTGAGAGACTCAATGCAATTGACGCGGAGAAAACAAAAGCGCTTCAGGAAGAAAATTATGAGCTTGCCGC
GAAACTGCGTGATGAAGAAGCGGCTTTGGAAAAGCAGCTGGCGCATGAAACACCGGCCTCTTCACCTGAAATCGGCGCGG
AGCATATTCAAGCCATCATTGAACAAAAAACAGGCATTCCGGTCGGAAAACTCCAGGCTGATGAACAAGTCAAAATGAAG
GAACTTGAAGAGCATCTTCATCAGCGTGTCATCGGTCAGGAAAAAGCCGTGAAAAAAGTGACGAAAGCAGTCAGACGAAG
CCGCGCCGGTTTAAAATCCAAAAACAGACCTGTCGGCTCCTTCCTCTTTGTCGGACCGACCGGAGTCGGAAAAACCGAGT
TATCAAAGACACTCGCAGATGAACTGTTCGGTACAAAAGATTCCATTATCCGTCTCGATATGAGTGAATACATGGAAAAA
CACGCCGTATCAAAAATTATCGGTTCACCGCCGGGATATGTCGGACACGATGAAGCCGGTCAATTAACGGAAAAAGTGCG
CCGCAATCCGTACAGCATCGTGCTGCTCGATGAGATTGAAAAAGCCCACCCTGATGTCCAGCATATGTTTCTGCAGATTA
TGGAGGACGGCCGTCTGACAGACAGCCAGGGCAGAACGGTCAGCTTTAAAGATACCGTTTTGATTATGACAAGCAACGCT
GGAACCGGCGAAAAACAGGTGAAAGTCGGATTCCAATCTGAAGAGAGCGTCATGGAAGAACAAACGCTGATTGATTCACT
GAGCGCGTTCTTCAAACCGGAGTTTTTAAACCGGTTTGACAGCATTATTGAATTCCAATCCCTGAAAAAAGAACATCTCG
TAAAAATCGTCAGCCTGCTTCTCACAGAGCTTGAAGACACATTAAAAGAGCGCGGCATCAGCCTGAGCGTCACCGATGAT
GCGAAGGAAAAAATCGCTGAAATCGGCTACCACCCCGCTTTCGGAGCACGCCCGCTCAGAAGAACCATCCAAGAATTGAT
CGAGGACGAAATGACAGATCTCTTATTGGATGACAACGAAATCAAAGCCTTCCATGTCGTAATGGAAGAGGACGGCATCA
AAGTCCGGGCACAATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (608-679)

• AAA domain (Cdc48 subfamily) (AAA_2) (436-602)

• ATPase family associated with various cellular activities (AAA) (AAA) (115-246)

• AAA lid domain (AAA_lid_9) (252-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus mutans UA159	56.735	100	0.597
clpC	Lactococcus lactis subsp. cremoris KW2	56.676	100	0.596
clpE	Streptococcus pneumoniae D39	55.995	100	0.589
clpE	Streptococcus pneumoniae R6	55.995	100	0.589
clpE	Streptococcus pneumoniae Rx1	55.995	100	0.589
clpE	Streptococcus pneumoniae TIGR4	55.995	100	0.589
clpC	Bacillus subtilis subsp. subtilis str. 168	54.232	91.404	0.496
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.677	90.544	0.423
clpC	Streptococcus thermophilus LMD-9	44	93.123	0.41
clpC	Streptococcus pneumoniae D39	46.104	88.252	0.407
clpC	Streptococcus pneumoniae TIGR4	46.104	88.252	0.407
clpC	Streptococcus pneumoniae Rx1	46.104	88.252	0.407
clpC	Streptococcus thermophilus LMG 18311	43.538	93.123	0.405
clpC	Streptococcus mutans UA159	44.553	88.109	0.393
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	41.914	86.819	0.364