Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GZH82_RS08595 Genome accession   NZ_CP048279
Coordinates   1846156..1847043 (-) Length   295 a.a.
NCBI ID   WP_162682146.1    Uniprot ID   A0A6P1WWM8
Organism   Staphylococcus sp. MI 10-1553     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1841156..1852043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH82_RS08580 (GZH82_08580) xerC 1841661..1842551 (-) 891 WP_162682143.1 tyrosine recombinase XerC -
  GZH82_RS08585 (GZH82_08585) trmFO 1842671..1843975 (-) 1305 WP_162682144.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GZH82_RS08590 (GZH82_08590) topA 1844003..1846072 (-) 2070 WP_162682145.1 type I DNA topoisomerase -
  GZH82_RS08595 (GZH82_08595) dprA 1846156..1847043 (-) 888 WP_162682146.1 DNA-processing protein DprA Machinery gene
  GZH82_RS08600 (GZH82_08600) sucD 1847278..1848183 (-) 906 WP_086427944.1 succinate--CoA ligase subunit alpha -
  GZH82_RS08605 (GZH82_08605) sucC 1848205..1849371 (-) 1167 WP_162682147.1 ADP-forming succinate--CoA ligase subunit beta -
  GZH82_RS08610 (GZH82_08610) - 1850174..1850449 (-) 276 WP_162682148.1 hypothetical protein -
  GZH82_RS08615 (GZH82_08615) - 1850541..1851326 (-) 786 WP_162682149.1 ribonuclease HII -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33408.73 Da        Isoelectric Point: 7.6808

>NTDB_id=420559 GZH82_RS08595 WP_162682146.1 1846156..1847043(-) (dprA) [Staphylococcus sp. MI 10-1553]
MKQFLLLLLYAGFSTQQIQPYYSKLCCLTGNLTQLIQSFKSMLSHMPQSHILQKFARLETLNIHTIEAALHEHQIVPIAI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSANSLSIIGARQHTAYTPQALEVLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHELSTIGVLGFGHFHHYPRDTQSLRQTMEQHHLTISEYPPHTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=420559 GZH82_RS08595 WP_162682146.1 1846156..1847043(-) (dprA) [Staphylococcus sp. MI 10-1553]
ATGAAACAATTTCTACTATTATTATTGTACGCTGGTTTTTCAACACAACAAATCCAACCCTACTATTCTAAACTTTGCTG
TCTTACAGGGAACTTGACACAATTGATTCAATCCTTCAAATCGATGCTTTCACACATGCCGCAATCTCATATTCTACAAA
AGTTCGCACGACTTGAAACGCTAAATATTCATACGATTGAAGCAGCTTTACATGAACATCAAATTGTCCCGATTGCGATA
GACGAACCACTTTATCCGCCATTGTTGAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTCGAACT
CCTTCAACATTCAGCAAATAGTCTTAGCATTATAGGAGCAAGGCAACATACAGCATACACCCCACAAGCGCTCGAAGTTC
TTTTTAACACGTTTCAACATTTTCCACTAACTATTATTTCAGGACTTGCACATGGTACAGACGCGCTCGCACATCATTAT
GCGATTCGACATGAGTTGTCCACGATTGGTGTGCTCGGCTTTGGGCATTTTCATCATTATCCTAGAGACACACAATCATT
ACGCCAAACGATGGAACAACACCATTTAACTATTAGCGAATATCCACCACATACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATCAGTGGTTTGTCAAAAGGGATACTTATCACTGAGGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGTGATATGTTCAACGTGCATACGAAAGGCAATAT
GCTACGTGTCAAAGAGGGGGCAGAAATTGTATTATGTGCCCAAGATATTTTGAAAGATTATGCGAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1WWM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

49.831

100

0.498
  dprA Staphylococcus aureus MW2

50.347

97.627

0.492

Multiple sequence alignment