Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   M654_RS16130 Genome accession   NZ_CP048273
Coordinates   3088496..3089266 (-) Length   256 a.a.
NCBI ID   WP_026587905.1    Uniprot ID   -
Organism   Bacillus sp. NSP9.1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3083496..3094266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M654_RS16110 (M654_016060) - 3083547..3084359 (-) 813 WP_026587901.1 pyruvate, water dikinase regulatory protein -
  M654_RS16115 (M654_016065) - 3084385..3085023 (-) 639 WP_026587902.1 helix-turn-helix transcriptional regulator -
  M654_RS16120 (M654_016070) glyS 3085224..3087263 (-) 2040 WP_026587903.1 glycine--tRNA ligase subunit beta -
  M654_RS16125 (M654_016075) glyQ 3087256..3088143 (-) 888 WP_026587904.1 glycine--tRNA ligase subunit alpha -
  M654_RS16130 (M654_016080) recO 3088496..3089266 (-) 771 WP_026587905.1 DNA repair protein RecO Machinery gene
  M654_RS16135 (M654_016085) - 3089304..3089447 (-) 144 WP_077736405.1 YqzL family protein -
  M654_RS16140 (M654_016090) era 3089604..3090509 (-) 906 WP_026587906.1 GTPase Era -
  M654_RS16145 (M654_016095) - 3090490..3090900 (-) 411 WP_026587907.1 cytidine deaminase -
  M654_RS16150 (M654_016100) - 3091034..3091414 (-) 381 WP_026587908.1 diacylglycerol kinase family protein -
  M654_RS16155 (M654_016105) ybeY 3091392..3091868 (-) 477 WP_026587909.1 rRNA maturation RNase YbeY -
  M654_RS16160 (M654_016110) - 3091865..3093949 (-) 2085 WP_142246141.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29374.05 Da        Isoelectric Point: 8.8014

>NTDB_id=420464 M654_RS16130 WP_026587905.1 3088496..3089266(-) (recO) [Bacillus sp. NSP9.1]
MLTKCEGIVIRTNDYGESNKIITLLTRENGKIGVLARGAKKPNSRLSAISQPFLYGSFLFRTSSGLGTLEQGEMIDSMRN
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIITNLIEVKMLGVLGLYPELNECVHCKSKEG
TFHFSIRDNGFICHRCFAKDPYRVPLSPASVRLLRLFFYFDLSRLGNVSVKQETKEELKTVIQLYYDEYSGIYLKSRRFM
EQMDNMKKMLGKENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=420464 M654_RS16130 WP_026587905.1 3088496..3089266(-) (recO) [Bacillus sp. NSP9.1]
ATGCTGACGAAATGTGAAGGTATCGTCATTCGTACAAATGATTACGGAGAATCAAATAAAATCATTACACTGTTAACGAG
GGAAAATGGGAAAATCGGCGTGCTGGCCAGGGGGGCAAAAAAGCCGAACAGCCGCCTGTCCGCCATTTCCCAGCCGTTTC
TTTATGGCTCGTTTTTATTCAGAACGTCATCAGGTCTCGGCACATTGGAGCAGGGCGAAATGATCGATAGCATGCGGAAT
ATCCGGGAGGATCTTTTTTTAACGGCATATGCCGCATATATCGCAGAATTAATTGATAAGGGGACTGAGGAAAAGAAGCC
GAATCCGTTTTTATTCGAACTGCTTCTTCAGTCGATGAGAAGGCTGAATGACGGTACAGATCCCGACATCATCACCAATC
TCATCGAAGTCAAAATGCTCGGTGTGCTCGGCCTGTATCCGGAATTAAACGAATGTGTCCACTGCAAAAGTAAGGAAGGC
ACATTCCACTTTTCCATTCGGGACAACGGCTTCATTTGCCATCGCTGTTTTGCGAAAGATCCGTACAGGGTTCCGCTGTC
TCCTGCATCCGTAAGGCTCTTGAGGCTGTTTTTTTATTTTGACCTTTCAAGGCTTGGCAATGTATCGGTCAAACAGGAGA
CGAAAGAGGAGCTGAAAACAGTCATCCAGCTTTATTATGATGAGTACTCCGGGATTTATTTGAAATCACGGCGCTTCATG
GAGCAAATGGACAATATGAAAAAAATGCTGGGGAAAGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

76.953

100

0.77

Multiple sequence alignment