Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   IB936_RS07280 Genome accession   NZ_CP061133
Coordinates   1442861..1443895 (-) Length   344 a.a.
NCBI ID   WP_010922583.1    Uniprot ID   A0A0H2UWB0
Organism   Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1437861..1448895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB936_RS07245 (IB936_07245) - 1438637..1438939 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  IB936_RS07250 (IB936_07250) rnpM 1438932..1439228 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  IB936_RS07255 (IB936_07255) nusA 1439244..1440401 (-) 1158 WP_002983485.1 transcription termination factor NusA -
  IB936_RS07260 (IB936_07260) rimP 1440576..1441112 (-) 537 WP_011528897.1 ribosome maturation factor RimP -
  IB936_RS07270 (IB936_07270) trmB 1441371..1442006 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  IB936_RS07275 (IB936_07275) ccrZ 1442006..1442797 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  IB936_RS07280 (IB936_07280) pptB 1442861..1443895 (-) 1035 WP_010922583.1 ABC transporter permease Regulator
  IB936_RS07285 (IB936_07285) pptA 1443898..1444623 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  IB936_RS07290 (IB936_07290) - 1444695..1445114 (+) 420 WP_002983376.1 HIT family protein -
  IB936_RS07295 (IB936_07295) - 1445111..1445467 (+) 357 WP_002983373.1 hypothetical protein -
  IB936_RS07300 (IB936_07300) brpA 1445578..1446861 (-) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  IB936_RS07305 (IB936_07305) - 1446870..1447394 (-) 525 WP_002994338.1 GNAT family N-acetyltransferase -
  IB936_RS07310 (IB936_07310) tsaE 1447369..1447830 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40274.52 Da        Isoelectric Point: 10.3713

>NTDB_id=420464 IB936_RS07280 WP_010922583.1 1442861..1443895(-) (pptB) [Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNMLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=420464 IB936_RS07280 WP_010922583.1 1442861..1443895(-) (pptB) [Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTTTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATATGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2UWB0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427


Multiple sequence alignment