Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   M654_RS15775 Genome accession   NZ_CP048273
Coordinates   3027498..3027833 (+) Length   111 a.a.
NCBI ID   WP_006637528.1    Uniprot ID   -
Organism   Bacillus sp. NSP9.1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3022498..3032833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M654_RS15755 (M654_015705) gcvT 3022947..3024041 (-) 1095 WP_026587839.1 glycine cleavage system aminomethyltransferase GcvT -
  M654_RS15760 (M654_015710) - 3024625..3026304 (+) 1680 WP_026587840.1 SNF2-related protein -
  M654_RS15765 (M654_015715) - 3026308..3027102 (+) 795 WP_026587841.1 YqhG family protein -
  M654_RS15770 (M654_015720) sinI 3027288..3027464 (+) 177 WP_026587842.1 anti-repressor SinI family protein Regulator
  M654_RS15775 (M654_015725) sinR 3027498..3027833 (+) 336 WP_006637528.1 helix-turn-helix domain-containing protein Regulator
  M654_RS15780 (M654_015730) - 3027943..3028737 (-) 795 WP_026587843.1 TasA family protein -
  M654_RS15785 (M654_015735) - 3028806..3029390 (-) 585 WP_026587844.1 signal peptidase I -
  M654_RS15790 (M654_015740) tapA 3029387..3030115 (-) 729 WP_026587845.1 amyloid fiber anchoring/assembly protein TapA -
  M654_RS15795 (M654_015745) - 3030385..3030702 (+) 318 WP_026587846.1 YqzG/YhdC family protein -
  M654_RS15800 (M654_015750) - 3030789..3030974 (-) 186 WP_026587847.1 YqzE family protein -
  M654_RS15805 (M654_015755) comGG 3031046..3031411 (-) 366 WP_026587848.1 competence type IV pilus minor pilin ComGG -
  M654_RS24145 (M654_015760) comGF 3031425..3031913 (-) 489 WP_077736493.1 competence type IV pilus minor pilin ComGF -
  M654_RS15815 (M654_015765) comGE 3031822..3032169 (-) 348 WP_026587850.1 competence type IV pilus minor pilin ComGE -
  M654_RS15820 (M654_015770) comGD 3032153..3032596 (-) 444 WP_236251143.1 competence type IV pilus minor pilin ComGD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12963.59 Da        Isoelectric Point: 5.9495

>NTDB_id=420460 M654_RS15775 WP_006637528.1 3027498..3027833(+) (sinR) [Bacillus sp. NSP9.1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=420460 M654_RS15775 WP_006637528.1 3027498..3027833(+) (sinR) [Bacillus sp. NSP9.1]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCTATAGAAAGAAACTTACAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTTGATGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAT
CTAGTACGTGACGCTATGGCTTCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAAGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937

Multiple sequence alignment