Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   M654_RS14415 Genome accession   NZ_CP048273
Coordinates   2779867..2780463 (+) Length   198 a.a.
NCBI ID   WP_026587579.1    Uniprot ID   A0A6I7FJ93
Organism   Bacillus sp. NSP9.1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2774867..2785463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M654_RS14375 (M654_014325) - 2775907..2776413 (-) 507 WP_026587571.1 PTS glucose transporter subunit IIA -
  M654_RS14380 (M654_014330) - 2776592..2777011 (+) 420 WP_026587572.1 Hsp20/alpha crystallin family protein -
  M654_RS14385 (M654_014335) - 2777030..2777446 (-) 417 WP_026587573.1 YppG family protein -
  M654_RS14390 (M654_014340) - 2777628..2777828 (+) 201 WP_026587574.1 YppF family protein -
  M654_RS14395 (M654_014345) - 2777858..2778232 (-) 375 WP_236251137.1 YppE family protein -
  M654_RS14400 (M654_014350) - 2778287..2778514 (-) 228 WP_026587576.1 YppD family protein -
  M654_RS14405 (M654_014355) sspM 2778719..2778823 (+) 105 WP_026587577.1 acid-soluble spore protein SspM -
  M654_RS14410 (M654_014360) - 2778856..2779788 (-) 933 WP_051290419.1 DUF2515 domain-containing protein -
  M654_RS14415 (M654_014365) recU 2779867..2780463 (+) 597 WP_026587579.1 Holliday junction resolvase RecU Machinery gene
  M654_RS14420 (M654_014370) - 2780522..2783176 (+) 2655 WP_026587580.1 PBP1A family penicillin-binding protein -
  M654_RS14425 (M654_014375) - 2783210..2783665 (-) 456 WP_236251269.1 hypothetical protein -
  M654_RS14430 (M654_014380) nth 2783701..2784363 (-) 663 WP_026587582.1 endonuclease III -
  M654_RS14435 (M654_014385) - 2784381..2785076 (-) 696 WP_026587583.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23138.33 Da        Isoelectric Point: 9.5165

>NTDB_id=420456 M654_RS14415 WP_026587579.1 2779867..2780463(+) (recU) [Bacillus sp. NSP9.1]
MIRYPNGKAYQPKNAASSLKKKPSYSNRGMTLEDDLNETNMYYLNHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGIYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWDRKQKNG
RKSIRKDELQEAAHPISLGYSPRIDYIKVIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=420456 M654_RS14415 WP_026587579.1 2779867..2780463(+) (recU) [Bacillus sp. NSP9.1]
GTGATTCGCTATCCGAACGGCAAAGCCTATCAGCCGAAAAATGCTGCCTCATCCTTAAAAAAGAAGCCGTCATACAGCAA
TCGCGGGATGACCCTCGAAGACGACCTGAATGAAACGAATATGTATTATCTCAATCATTCGATTGCGGTGATTCATAAAA
AACCGACACCTGTCCAAATTGTCCAGGTCGACTACCCGAAACGAAGCGCGGCAGTGATCAAAGAAGCCTACTTTAAACAG
TCGTCAACGACTGATTATAACGGGATTTATAAAGGGCGCTACATCGATTTTGAAGCGAAAGAAACAAAGAGCCGGACATC
GTTCCCCCTGCAAAATTTTCACGATCACCAGATCGAGCATATGAAGCAGGTGGTGGCCCAGGACGGTATTTGCTTTGTTA
TTATATCCGCATTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGACAGAAAGCAGAAAAACGGC
AGAAAATCGATTCGAAAAGATGAACTGCAGGAAGCTGCTCATCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAAGTTATTGACCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7FJ93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

84.08

100

0.854

Multiple sequence alignment