Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GYN04_RS10785 Genome accession   NZ_CP048254
Coordinates   2059386..2059814 (-) Length   142 a.a.
NCBI ID   WP_250328381.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT530     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2054386..2064814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN04_RS10745 (GYN04_10480) - 2054556..2054912 (-) 357 Protein_2082 pilin -
  GYN04_RS10750 (GYN04_10485) - 2054878..2055330 (-) 453 Protein_2083 pilin -
  GYN04_RS10755 (GYN04_10490) lpxC 2055459..2056382 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  GYN04_RS10765 - 2057096..2057461 (-) 366 Protein_2085 pilin -
  GYN04_RS10770 - 2057427..2057831 (-) 405 Protein_2086 pilin -
  GYN04_RS10775 (GYN04_10500) - 2057884..2058270 (-) 387 Protein_2087 pilin -
  GYN04_RS10780 (GYN04_10505) - 2058404..2058850 (-) 447 Protein_2088 pilin -
  GYN04_RS10785 (GYN04_10510) pilE 2059386..2059814 (-) 429 WP_250328381.1 pilin Machinery gene
  GYN04_RS10790 - 2060253..2060591 (-) 339 Protein_2090 pilin -
  GYN04_RS10795 - 2060610..2060954 (-) 345 Protein_2091 pilin -
  GYN04_RS10800 - 2060994..2061200 (-) 207 Protein_2092 pilin -
  GYN04_RS10805 (GYN04_10520) - 2061776..2062465 (-) 690 WP_003690369.1 M48 family metallopeptidase -
  GYN04_RS10810 (GYN04_10525) - 2062462..2063205 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  GYN04_RS10815 (GYN04_10530) gmhB 2063235..2063798 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15115.90 Da        Isoelectric Point: 8.4869

>NTDB_id=420259 GYN04_RS10785 WP_250328381.1 2059386..2059814(-) (pilE) [Neisseria gonorrhoeae strain CT530]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGIWPKDNTSAGVASASDIKGKYVKEVKVEKGVVTAEMASTGVNKEIQ
GKKLSLWGRRENGSVKWFCGQPVTRAAGKAGADADAVTADATANGINTKHLPSTCRDKHSDT

Nucleotide


Download         Length: 429 bp        

>NTDB_id=420259 GYN04_RS10785 WP_250328381.1 2059386..2059814(-) (pilE) [Neisseria gonorrhoeae strain CT530]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCATATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCCGCTTCAGACATCAAAGGCA
AATATGTTAAGGAAGTTAAAGTCGAAAAAGGCGTCGTTACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCGC
CGGCAAAGCCGGCGCCGACGCCGACGCCGTCACCGCCGACGCCACCGCCAACGGCATCAACACCAAGCACCTGCCGTCAA
CCTGCCGCGATAAACACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.028

100

0.725
  pilE Neisseria gonorrhoeae MS11

69.93

100

0.704

Multiple sequence alignment