Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   GYN04_RS09845 Genome accession   NZ_CP048254
Coordinates   1885841..1886236 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT530     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1880841..1891236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN04_RS09825 (GYN04_09565) rfbC 1880918..1881475 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  GYN04_RS09830 (GYN04_09570) - 1881519..1883537 (-) 2019 WP_003690172.1 oligopeptide transporter, OPT family -
  GYN04_RS09835 (GYN04_09575) dnaJ 1883732..1884853 (-) 1122 WP_123768239.1 molecular chaperone DnaJ -
  GYN04_RS09840 (GYN04_09580) - 1884987..1885436 (+) 450 WP_017147192.1 transposase -
  GYN04_RS09845 (GYN04_09585) comE 1885841..1886236 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  GYN04_RS09850 - 1886338..1886457 (-) 120 Protein_1914 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=420253 GYN04_RS09845 WP_003703428.1 1885841..1886236(-) (comE) [Neisseria gonorrhoeae strain CT530]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=420253 GYN04_RS09845 WP_003703428.1 1885841..1886236(-) (comE) [Neisseria gonorrhoeae strain CT530]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment