Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   GYN04_RS08820 Genome accession   NZ_CP048254
Coordinates   1691571..1692269 (-) Length   232 a.a.
NCBI ID   WP_003689902.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT530     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1686571..1697269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN04_RS08805 (GYN04_08565) - 1686932..1687933 (-) 1002 WP_004467106.1 peptidylprolyl isomerase -
  GYN04_RS08810 (GYN04_08570) - 1688035..1690440 (-) 2406 WP_003689900.1 LPS-assembly protein LptD -
  GYN04_RS08815 (GYN04_08575) amgK 1690510..1691514 (+) 1005 WP_003689901.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  GYN04_RS08820 (GYN04_08580) dsbA1 1691571..1692269 (-) 699 WP_003689902.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  GYN04_RS08825 (GYN04_08585) murJ 1692707..1694245 (+) 1539 WP_003689904.1 murein biosynthesis integral membrane protein MurJ -
  GYN04_RS08830 (GYN04_08590) - 1694378..1695334 (+) 957 WP_003689905.1 alpha/beta fold hydrolase -
  GYN04_RS08835 (GYN04_08595) trpC 1695385..1696167 (+) 783 WP_003694229.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25235.89 Da        Isoelectric Point: 5.6758

>NTDB_id=420251 GYN04_RS08820 WP_003689902.1 1691571..1692269(-) (dsbA1) [Neisseria gonorrhoeae strain CT530]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAR
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLPLARLAAAVDMAAAESKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARAGKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=420251 GYN04_RS08820 WP_003689902.1 1691571..1692269(-) (dsbA1) [Neisseria gonorrhoeae strain CT530]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGACTGGTCGAAGGGCAAAACTACACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAGGTTGAAGTGCTTGAGTTTTTCGGCTATTTTTGTCCGCACTGCGCCCGC
CTCGAACCTGTTTTGAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGCCGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGAAAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAATCCCCCGAAAGTCAGGCGCGCGCCGGCAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTTGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGTGAAGAACAAAAAGCCGCGCAGTAG

Domains

Predicted by InterProScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

97.845

100

0.978
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621

Multiple sequence alignment