Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   GYN04_RS08695 Genome accession   NZ_CP048254
Coordinates   1663258..1663653 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT530     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1658258..1668653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN04_RS08660 (GYN04_08420) - 1658571..1658816 (-) 246 WP_003689849.1 hypothetical protein -
  GYN04_RS08665 (GYN04_08425) - 1658928..1659356 (+) 429 WP_020997399.1 CopD family protein -
  GYN04_RS08670 (GYN04_08430) - 1659368..1659844 (+) 477 WP_003689851.1 CYTH domain-containing protein -
  GYN04_RS08675 (GYN04_08435) - 1659874..1660362 (-) 489 WP_047920276.1 dihydrofolate reductase -
  GYN04_RS08680 (GYN04_08440) aroG 1660430..1661485 (-) 1056 WP_003689853.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  GYN04_RS08685 (GYN04_08445) - 1661647..1661874 (-) 228 WP_153707886.1 hypothetical protein -
  GYN04_RS11830 (GYN04_08450) - 1662102..1662398 (+) 297 WP_284446080.1 hypothetical protein -
  GYN04_RS11835 (GYN04_08455) - 1662395..1662634 (+) 240 WP_003689861.1 membrane protein -
  GYN04_RS12010 - 1663177..1663324 (+) 148 Protein_1694 peptidase -
  GYN04_RS08695 (GYN04_08460) comE 1663258..1663653 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  GYN04_RS08700 - 1663755..1663874 (-) 120 Protein_1696 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=420250 GYN04_RS08695 WP_003703428.1 1663258..1663653(-) (comE) [Neisseria gonorrhoeae strain CT530]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=420250 GYN04_RS08695 WP_003703428.1 1663258..1663653(-) (comE) [Neisseria gonorrhoeae strain CT530]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment